Publications
Advanced Strategies for Proton-Transfer Reactions Coupled with Parallel Ion Parking on a 21 T FT-ICR MS for Intact Protein Analysis. Analytical Chemistry. 93:9119-9128.
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2021. An atlas of protein turnover rates in mouse tissues. Nature Communications. 12
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2021. Automated Assignment of Proteoform Classification Levels. Journal of Proteome Research. 20:4101-4105.
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2021. Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus. Journal of Proteome Research. 20:1997-2004.
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2021. Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data. Journal of Proteome Research. 20:317-325.
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2021. Fused in sarcoma regulates DNA replication timing and kinetics. Journal of Biological Chemistry. 297
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2021. ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics. Journal of Proteome Research. 20:1936-1942.
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2021. Spritz: A Proteogenomic Database Engine. Journal of Proteome Research. 20:1826-1834.
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2021. An Algorithm to Improve the Speed of Semi and Non-specific Enzyme Searches in Proteomics. Current Bioinformatics. 15:1065-1074.
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2020. A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics. Journal of Proteome Research. 19:1975-1981.
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2020. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data. Journal of Proteome Research. 19:3510-3517.
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2020. O-Pair Search with MetaMorpheus for O-glycopeptide characterization. Nature Methods. 17:1133-+.
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2020. Best practices and benchmarks for intact protein analysis for top-down mass spectrometry. Nature methods. 16(7)
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2019. Comprehensive in vivo identification of the c-Myc mRNA interactome using HyPR-MS. Cold Spring Harbor Laboratory Press.
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2019. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database. Journal of Proteome Research. 18(10)
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2019. Differentiated fibrocytes assume a functional mesenchymal phenotype with regenerative potential. Science advances. 5(5)
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2019. Encrypted Oligonucleotide Arrays for Molecular Authentication. ACS Combinatorial Science.
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2019. A five-level classification system for proteoform identifications. Nature methods. 16(10)
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2019. Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion. Journal of Proteome Research. 18:349-358.
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2019. HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development. Plant Physiology. 180(1):342-355.
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2019. Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data. Journal of Proteome Research. 18(9)
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