FlashLFQ: An ultrafast label-free quantification algorithm for mass-spectrometry proteomics.

    MetaMorpheus: Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities.

mzLib: A library for mass spectrometry projects.

    Proteoform Suite: Software for constructing, quantifying, and visualizing proteoform families.


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