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Best practices and benchmarks for intact protein analysis for top-down mass spectrometry. Nature methods. 16(7). 2019.
A five-level classification system for proteoform identifications. Nature methods. 16(10). 2019.
Adaptation of Hybridization Capture of Chromatin-associated Proteins for Proteomics to Mammalian Cells. Journal of Visualized Experiments. (136). 2018.
Identification and quantification of murine mitochondrial proteoforms using an integrated top-down and intact-mass strategy. Journal of Proteome Research. 17(10):3526-3536.. 2018.
Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS. Human Molecular Genetics. 27:322-337.. 2018.
ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 17:1321-1325.. 2018.
HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae. Genomics. 107:267-273.. 2016.
Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.. 2016.
The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets. PLoS Genet. 12(e1006466). 2016.
Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics. Analytical Chemistry. 86:2314-2319.. 2014.
Absolute Quantification of Prion Protein (90-231) Using Stable Isotope-Labeled Chymotryptic Peptide Standards in a LC-MRM AQUA Workflow. Journal of the American Society for Mass Spectrometry. 23:1522-1533.. 2012.
A Mechanical Nanomembrane Detector for Time-of-Flight Mass Spectrometry. Nano Letters. 11:3681-3684.. 2011.
Quantitative proteomic analysis of the chemolithoautotrophic bacterium Nitrosomonas europaea: Comparison of growing- and energy-starved cells. Journal of Proteomics. 74:411-419.. 2011.
Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction. Molecular Cell. 41:139-149.. 2011.
Controlling Oligonucleotide Surface Density in Light-Directed DNA Array Fabrication. Langmuir. 25:6570-6575.. 2009.
Rapid Determination of RNA Accessible Sites by Surface Plasmon Resonance Detection of Hybridization to DNA Arrays. Analytical Chemistry. 81:8949-8956.. 2009.
Carbon-on-metal films for surface plasmon resonance detection of DNA arrays. Journal of the American Chemical Society. 130:8611-8613.. 2008.
In situ oligonucleotide synthesis on carbon materials: stable substrates for microarray fabrication. Nucleic Acids Research. 36. 2008.