Publications

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Journal Article
Strother T., Cai W., Zhao X.S, Hamers R.J, Smith L.M.  2000.  Synthesis and characterization of DNA-modified silicon (111) surfaces. Journal of the American Chemical Society. 122:1205-1209.
Peelen D., Kodoyianni V., Lee J., Zheng T., Shortreed M.R, Smith L.M.  2006.  Specific capture of mammalian cells by cell surface receptor binding to ligand immobilized on gold thin films. Journal of Proteome Research. 5:1580-1585.
Hallows WC, Yu W, Smith BC, Devires MK, Ellinger JJ, Someya S, Shortreed MR, Prolla T, Markley JL, Smith L.M et al..  2011.  Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction. Molecular Cell. 41:139-149.
Wu C.H, Chen S.Y, Shortreed M.R, Kreitinger G.M, Yuan Y., Frey B.L, Zhang Y., Mirza S., Cirillo L.A, Olivier M. et al..  2011.  Sequence-Specific Capture of Protein-DNA Complexes for Mass Spectrometric Protein Identification. Plos One. 6
Gemperline D.C, Marshall R.S, Lee K.H, Zhao Q.Z, Hu W.M, McLoughlin F., Scalf M., Smith L.M, Vierstra R.D.  2019.  Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.
Chen X., Lu L., Mayer K.S, Scalf M., Qian S., Lomax A., Smith L.M, Zhong X..  2016.  POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Elife. 5
Tang W, Nelson CM, Zhu L, Smith L.M.  1997.  Positive ion formation in the ultraviolet matrix- assisted laser desorption/ionization analysis of oligonucleotides by using 2,5-dihydroxybenzoic acid. Journal of the American Society for Mass Spectrometry. 8:218-224.
Zhu L., Parr G.R, Fitzgerald M.C, Nelson C.M, Smith L.M.  1995.  Oligodeoxynucleotide Fragmentation in MALDI/TOF Mass Spectrometry Using 355-nm Radiation. Journal of the American Chemical Society. 117:6048-6056.
Kim S.H, Stiles S.G, Feichtmeier J.M, Ramesh N., Zhan L.H, Scalf M.A, Smith L.M, Pandey U.B, Tibbetts R.S.  2018.  Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS. Human Molecular Genetics. 27:322-337.
Zhang X, Scalf M, Westphall MS, Smith L.M.  2008.  Membrane protein separation and analysis by supercritical fluid chromatography-mass spectrometry. Analytical Chemistry. 80:2590-2598.
Zheng T, Yu H, Alexander CM, Beebe DJ, Smith L.M.  2007.  Lectin-modified microchannels for mammalian cell capture and purification. Biomedical Microdevices. 9:611-617.
Zheng T., Peelen D., Smith L.M.  2005.  Lectin arrays for profiling cell surface carbohydrate expression. Journal of the American Chemical Society. 127:9982-9983.
Zhang X., Scalf M., Berggren T.W, Westphall M.S, Smith L.M.  2006.  Identification of mammalian cell lines using MALDI-TOF and LC-ESI-MS/MS mass spectrometry. Journal of the American Society for Mass Spectrometry. 17:490-499.
Aebersold R., Agar J.N, Amster I.J, Baker M.S, Bertozzi C.R, Boja E.S, Costello C.E, Cravatt B.F, Fenselau C., Garcia B.A et al..  2018.  How many human proteoforms are there? Nature Chemical Biology. 14:206-214.
Mayer K.S, Chen X., Sanders D., Chen J., Jiang J., N P., Scalf M., Smith L.M, Zhong X..  2019.  HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development. Plant Physiology. 180(1):342-355.
Nelson CM, Zhu L, Tang W, Smith L.M, Crellin K, Berry J, Beauchamp JL.  1996.  Fragmentation mechanisms of oligonucleotides in MALDI mass spectrometry. Proceedings of SPIE - The International Society for Optical Engineering. 2680:247-255.
Tang W, Krause J, Zhu L, Smith L.M.  1997.  Factors influencing oligonucleotide stability in matrix-assisted laser desorption/ionization (MALDI) mass spectroscopy. International Journal of Mass Spectrometry and Ion Processes. 169/170:301-311.
Buxton K.E, Kennedy-Darling J., Shortreed M.R, Zaidan N.Z, Olivier M., Scalf M., Sridharan R., Smith L.M.  2017.  Elucidating Protein-DNA Interactions in Human Alphoid Chromatin via Hybridization Capture and Mass Spectrometry. Journal of Proteome Research. 16:3433-3442.
Yang Z., Qian S., Scheid R.N, Lu L., Chen X., Liu R., Du X., Lv X., Boersma M.D, Scalf M. et al..  2018.  EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis. Nature genetics. 50(9)
Mouradian S., Skogen J.W, Dorman F.D, Zarrin F., Kaufman S.L, Smith L.M.  1997.  DNA analysis using an electrospray scanning mobility particle sizer. Analytical Chemistry. 69:919-925.
Tang W, Zhu L, Smith L.M.  1997.  Controlling DNA Fragmentation in MALDI-MS by Chemical Modification. Analytical Chemistry. 69:302-312.
Zaidan N.Z, Walker K.J, Brown J.E, Schaffer L.V, Scalf M., Shortreed M.R, Iyer G., Smith L.M, Sridharan R..  2018.  Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance. Stem Cell Reports. 10:627-641.
Chen X.S, Lu L., Qian S.M, Scalf M., Smith L.M, Zhong X.H.  2018.  Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing. Plant Cell. 30:134-152.
Fitzgerald M.C, Zhu L., Smith L.M.  1993.  The analysis of mock DNA sequencing reactions using matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry. 7:895-897.
Chen S.Y, Zheng T., Shortreed M.R, Alexander C., Smith L.M.  2007.  Analysis of cell surface carbohydrate expression patterns in normal and tumorigenic human breast cell lines using lectin arrays. Analytical Chemistry. 79:5698-5702.