Publications

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Miscellaneous
Russell J.N, Butler J.E, Hamers R.J, Smith L.M, Bent S.F.  2003.  Creating Chemical and Biological Diamond Interfaces.
Journal Article
Keller M.P, Paul P.K, Rabaglia M.E, Stapleton D.S, Schueler K.L, Broman A.T, Ye S.I, Leng N., Brandon C.J, Neto E.C et al..  2016.  The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets. PLoS Genet. 12(e1006466)
Rytz T.C, Miller M.J, McLoughlin F., Augustine R.C, Marshall R.S, Juan Y.T, Charng Y.Y, Scalf M., Smith L.M, Vierstra R.D.  2018.  SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress. Plant Cell. 30:1077-1099.
Collins F.S, Benjamin L.J, Botstein D., Cox J.R, Davidson N., Gray J.W, Holtzman N., Housman D.E, Jamison K.R, Nelkin D. et al..  1994.  Statement on use of DNA testing for presymptomatic identification of cancer risk. JAMA. 271:785-785.
Miller M.J, Scalf M., Rytz T.C, Hubler S.L, Smith L.M, Vierstra R.D.  2013.  Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation in Arabidopsis. Molecular & Cellular Proteomics. 12:449-463.
Yang W, Auciello O, Butler JE, Cai W, Carlisle JA, Gerbi JE, Gruen DM, Knickerbocker T, Lasseter TL, Russell, Jr. JN et al..  2002.  Preparation and electrochemical characterization of DNA-modified nanocrystalline diamond films. Materials Research Society Symposium Proceedings. 737
Strother T., Knickerbocker T., Russell J.N, Butler J.E, Smith L.M, Hamers R.J.  2002.  Photochemical functionalization of diamond films. Langmuir. 18:968-971.
Russell JD, Hilger RT, Ladror DT, Tervo MA, Scalf M, Shortreed MR, Coon J.J, Smith L.M.  2011.  Parallel Detection of Intrinsic Fluorescence from Peptides and Proteins for Quantification during Mass Spectrometric Analysis. Analytical Chemistry. 83:2187-2193.
Lu L., Riley N.M, Shortreed M.R, Bertozzi C.R, Smith L.M.  2020.  O-Pair Search with MetaMorpheus for O-glycopeptide characterization. Nature Methods. 17:1133-+.
Rhoads T.W, Rose C.M, Bailey D.J, Riley N.M, Molden R.C, Nestler A.J, Merrill A.E, Smith L.M, Hebert A.S, Westphall M.S et al..  2014.  Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics. Analytical Chemistry. 86:2314-2319.
Rhoads T.W, Rose C.M, Bailey D.J, Riley N.M, Molden R.C, Nestler A.J, Merrill A.E, Smith L.M, Hebert A.S, Westphall M.S et al..  2014.  Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics. Analytical Chemistry. 86:2314-2319.
Rhoads T.W, Rose C.M, Bailey D.J, Riley N.M, Molden R.C, Nestler A.J, Merrill A.E, Smith L.M, Hebert A.S, Westphall M.S et al..  2014.  Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics. Analytical Chemistry. 86:2314-2319.
Kim S.H, Stiles S.G, Feichtmeier J.M, Ramesh N., Zhan L.H, Scalf M.A, Smith L.M, Pandey U.B, Tibbetts R.S.  2018.  Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS. Human Molecular Genetics. 27:322-337.
Carr A.V, Frey B.L, Scalf M., Cesnik A.J, Rolfs Z., Pike K.A, Yang B., Keller M.P, Jarrard D.F, Shortreed M.R et al..  2022.  MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses. Journal of Proteome Research. 21:410-419.
Chen D.H, Johnson A.F, Severin J.M, Rank D.R, Smith L.M, Guilfoyle R.A.  1996.  M13-102: A vector for facilitating construction and improving quality of M13 shotgun libraries. Gene. 172:53-57.
Smith L.M, Rubenstein JLR, J. Parce W, McConnell HM.  1980.  Lateral diffusion of M-13 coat protein in mixtures of phosphatidylcholine and cholesterol. Biochemistry. 19:5907-11.
Rolfs Z., Smith L.M.  2021.  Internal Fragment Ions Disambiguate and Increase Identifications in Top-Down Proteomics. Journal of Proteome Research. 20:5412-5418.
J. Mellors S, Jorabchi K, Smith L.M, J. Ramsey M.  2010.  Integrated Microfluidic Device for Automated Single Cell Analysis Using Electrophoretic Separation and Electrospray Ionization Mass Spectrometry. Analytical Chemistry. 82:967-973.
Phillips MF, Lockett MR, Rodesch MJ, Shortreed MR, Cerrina F, Smith L.M.  2008.  In situ oligonucleotide synthesis on carbon materials: stable substrates for microarray fabrication. Nucleic Acids Research. 36
Lu L, Millikin RJ, Solntsev SK, Rolfs Z, Scalf M, Shortreed MR, Smith LM.  2018.  Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus. Journal of Proteome Research. 17(7):2370-2376.
Schaffer L.V, Rensvold J.W, Shortreed M.R, Cesnik A.J, Jochem A., Scalf M., Frey B.L, Pagliarini D.J, Smith L.M.  2018.  Identification and quantification of murine mitochondrial proteoforms using an integrated top-down and intact-mass strategy. Journal of Proteome Research. 17(10):3526-3536.
Guillen-Ahlers H., Rao P.K, Levenstein M.E, Kennedy-Darling J., Perumalla D.S, Jadhav A.Y, Glenn J.P, Ludwig-Kubinski A., Drigalenko E., Montoya M.J et al..  2016.  HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae. Genomics. 107:267-273.
Dai Y.L, Millikin R.J, Rolfs Z., Shortreed M.R, Smith L.M.  2022.  A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis. Journal of Proteome Research. 21:2609-2618.
Aebersold R., Agar J.N, Amster I.J, Baker M.S, Bertozzi C.R, Boja E.S, Costello C.E, Cravatt B.F, Fenselau C., Garcia B.A et al..  2018.  How many human proteoforms are there? Nature Chemical Biology. 14:206-214.
Cartwright GS, Smith L.M, Heinzelmann EW, Ruebush MJ, J. Parce W, McConnell HM.  1982.  H-2Kk and vesicular stomatitis virus G proteins are not extensively associated in reconstituted membranes recognized by T cells. Proceedings of the National Academy of Sciences of the United States of America. 79:1506-10.

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