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U

Mead D.A, Pey N.K, Herrnstadt C., Marcil R.A, Smith L.M. 1991. A universal method for the direct cloning of PCR amplified nucleic acid. Bio/Technology. 9:657-663.

Mead D.A, Pey N.K, Herrnstadt C., Marcil R.A, Smith L.M. 1991. A universal method for the direct cloning of PCR amplified nucleic acid. Bio/Technology. 9:657-663.

Kolner DE, Mead DA, Smith L.M. 1992. Ultrathin DNA sequencing gels using microtrough vertical electrophoresis plates. BioTechniques. 13:338-9.

Millikin R.J, Solntsev S.K, Shortreed M.R, Smith L.M. 2018. Ultrafast Peptide Label-Free Quantification with FlashLFQ. Journal of Proteome Research. 17:386-391.

S

Rytz T.C, Miller M.J, McLoughlin F., Augustine R.C, Marshall R.S, Juan Y.T, Charng Y.Y, Scalf M., Smith L.M, Vierstra R.D. 2018. SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress. Plant Cell. 30:1077-1099.

Rytz T.C, Miller M.J, McLoughlin F., Augustine R.C, Marshall R.S, Juan Y.T, Charng Y.Y, Scalf M., Smith L.M, Vierstra R.D. 2018. SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress. Plant Cell. 30:1077-1099.

Rytz T.C, Miller M.J, McLoughlin F., Augustine R.C, Marshall R.S, Juan Y.T, Charng Y.Y, Scalf M., Smith L.M, Vierstra R.D. 2018. SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress. Plant Cell. 30:1077-1099.

Chen X., Fei Z.D, Smith L.M, Bradbury E.M, Majidi V.. 1999. Stable-isotope-assisted MALDI-TOF mass spectrometry for accurate determination of nucleotide compositions of PCR products. Analytical Chemistry. 71:3118-3125.

Cesnik A.J, Miller R.M, Ibrahim K., Lu L., Millikin R.J, Shortreed M.R, Frey B.L, Smith L.M. 2021. Spritz: A Proteogenomic Database Engine. Journal of Proteome Research. 20:1826-1834.

Cesnik A.J, Miller R.M, Ibrahim K., Lu L., Millikin R.J, Shortreed M.R, Frey B.L, Smith L.M. 2021. Spritz: A Proteogenomic Database Engine. Journal of Proteome Research. 20:1826-1834.

Hallows WC, Yu W, Smith BC, Devires MK, Ellinger JJ, Someya S, Shortreed MR, Prolla T, Markley JL, Smith L.M et al.. 2011. Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction. Molecular Cell. 41:139-149.

Wu C.H, Chen S.Y, Shortreed M.R, Kreitinger G.M, Yuan Y., Frey B.L, Zhang Y., Mirza S., Cirillo L.A, Olivier M. et al.. 2011. Sequence-Specific Capture of Protein-DNA Complexes for Mass Spectrometric Protein Identification. Plos One. 6

Mouradian S., Brumley R.L, Smith L.M. 1994. Separating field strength, temperature, and pulsing effects in pulsed field electrophoresis. Electrophoresis. 15:1084-1090.

Mouradian S., Nelson C.M, Smith L.M. 1996. A self-assembled matrix monolayer for UV-MALDI mass spectrometry. Journal of the American Chemical Society. 118:8639-8645.

R

Fitzgerald M.C, Skowron P., Vanetten J.L, Smith L.M, Mead D.A. 1992. Rapid shotgun cloning utilizing the two base recognition endonuclease CviJI. Nucleic Acids Research. 20:3753-3762.

Mandir JB, Lockett MR, Phillips MF, Allawi HT, Lyamichev VI, Smith L.M. 2009. Rapid Determination of RNA Accessible Sites by Surface Plasmon Resonance Detection of Hybridization to DNA Arrays. Analytical Chemistry. 81:8949-8956.

Q

Miller M.J, Scalf M., Rytz T.C, Hubler S.L, Smith L.M, Vierstra R.D. 2013. Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation in Arabidopsis. Molecular & Cellular Proteomics. 12:449-463.

P

Plubell D.L, Kall L., Webb-Robertson B.J, Bramer L.M, Ives A., Kelleher N.L, Smith L.M, Montine T.J, Wu C.C, MacCoss M.J. 2022. Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? br Journal of Proteome Research. 21:891-898.

Plubell D.L, Kall L., Webb-Robertson B.J, Bramer L.M, Ives A., Kelleher N.L, Smith L.M, Montine T.J, Wu C.C, MacCoss M.J. 2022. Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? br Journal of Proteome Research. 21:891-898.

Yau B., Naghiloo S., Diaz-Vegas A., Carr A.V, Van Gerwen J., Needham E.J, Jevon D., Chen S.Y, Hoehn K.L, Brandon A.E et al.. 2021. Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet. Iscience. 24

Gemperline D.C, Marshall R.S, Lee K.H, Zhao Q.Z, Hu W.M, McLoughlin F., Scalf M., Smith L.M, Vierstra R.D. 2019. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.

Gemperline D.C, Marshall R.S, Lee K.H, Zhao Q.Z, Hu W.M, McLoughlin F., Scalf M., Smith L.M, Vierstra R.D. 2019. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.

Miller R.M, Ibrahim K., Smith L.M. 2021. ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics. Journal of Proteome Research. 20:1936-1942.

Leduc R.D, Schwammle V., Shortreed M.R, Cesnik A.J, Solntsev S.K, Shaw J.B, Martin M.J, Vizcaino J.A, Alpi E., Danis P. et al.. 2018. ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 17:1321-1325.

Chen X., Lu L., Mayer K.S, Scalf M., Qian S., Lomax A., Smith L.M, Zhong X.. 2016. POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Elife. 5

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