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Yang W, Auciello O, Butler JE, Cai W, Carlisle JA, Gerbi JE, Gruen DM, Knickerbocker T, Lasseter TL, Russell, Jr. JN et al.. 2002. Preparation and electrochemical characterization of DNA-modified nanocrystalline diamond films. Materials Research Society Symposium Proceedings. 737

Leduc R.D, Schwammle V., Shortreed M.R, Cesnik A.J, Solntsev S.K, Shaw J.B, Martin M.J, Vizcaino J.A, Alpi E., Danis P. et al.. 2018. ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 17:1321-1325.

Liu Q., Frutos A.G, Wang L., Thiel A.J, Gillmor S.D, Strother C.T, Condon A.E, Corn R.M, Lagally M.G, Smith L.M. 1999. Progress toward demonstration of a surface based DNA computation: a one word approach to solve a model satisfiability problem. Biosystems. 52:25-33.

Miller R.M, Ibrahim K., Smith L.M. 2021. ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics. Journal of Proteome Research. 20:1936-1942.

Li Q.Y, Chang Z., Oliveira G., Xiong M., Smith L.M, Frey B.L, Welham N.V. 2016. Protein turnover during in vitro tissue engineering. Biomaterials. 81:104-113.

Smith L.M, Kelleher N.L, Ge Y., Down PConsortium. 2013. Proteoform: a single term describing protein complexity. Nature Methods. 10:186-187.

Cesnik A.J, Shortreed M.R, Schaffer L.V, Knoener R.A, Frey B.L, Scalf M., Solntsev S.K, Dai Y.X, Gasch A.P, Smith L.M. 2018. Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. 17:568-578.

Smith L.M, Kelleher N.L. 2018. Proteoforms as the next proteomics currency. Science. 359:1106-1107.

Sheynkman G.M, Shortreed M.R, Cesnik A.J, Smith L.M. 2016. Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.

Welham N.V, Chang Z., Smith L.M, Frey B.L. 2013. Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry. Biomaterials. 34:669-676.

Gemperline D.C, Marshall R.S, Lee K.H, Zhao Q.Z, Hu W.M, McLoughlin F., Scalf M., Smith L.M, Vierstra R.D. 2019. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.

Li Q.Y, Uygun B.E, Geerts S., Ozer S., Scalf M., Gilpin S.E, Ott H.C, Yarmush M.L, Smith L.M, Welham N.V et al.. 2016. Proteomic analysis of naturally-sourced biological scaffolds. Biomaterials. 75:37-46.

Yau B., Naghiloo S., Diaz-Vegas A., Carr A.V, Van Gerwen J., Needham E.J, Jevon D., Chen S.Y, Hoehn K.L, Brandon A.E et al.. 2021. Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet. Iscience. 24

Proffitt J.M, Glenn J., Cesnik A.J, Jadhav A., Shortreed M.R, Smith L.M, Kavanagh K., Cox L.A, Olivier M.. 2017. Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys. Bmc Genomics. 18

Johnson A.F, Wang R.F, Ji H.M, Chen D.H, Guilfoyle R.A, Smith L.M. 1996. Purification of single-stranded M13 DNA by cooperative triple-helix-mediated affinity capture. Analytical Biochemistry. 234:83-95.

Plubell D.L, Kall L., Webb-Robertson B.J, Bramer L.M, Ives A., Kelleher N.L, Smith L.M, Montine T.J, Wu C.C, MacCoss M.J. 2022. Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? br Journal of Proteome Research. 21:891-898.

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Nie B., Shortreed M.R, Smith L.M. 2006. Quantitative detection of individual cleaved DNA molecules on surfaces using gold nanoparticles and scanning electron microscope imaging. Analytical Chemistry. 78:1528-1534.

Pellitteri-Hahn M.C, Halligan B.D, Scalf M., Smith L.M, Hickey W.J. 2011. Quantitative proteomic analysis of the chemolithoautotrophic bacterium Nitrosomonas europaea: Comparison of growing- and energy-starved cells. Journal of Proteomics. 74:411-419.

Miller M.J, Scalf M., Rytz T.C, Hubler S.L, Smith L.M, Vierstra R.D. 2013. Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation in Arabidopsis. Molecular & Cellular Proteomics. 12:449-463.

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Mandir JB, Lockett MR, Phillips MF, Allawi HT, Lyamichev VI, Smith L.M. 2009. Rapid Determination of RNA Accessible Sites by Surface Plasmon Resonance Detection of Hybridization to DNA Arrays. Analytical Chemistry. 81:8949-8956.

Brumley R.L, Smith L.M. 1991. Rapid DNA sequencing by horizontal ultrathin gel electrophoresis. Nucleic Acids Research. 19:4121-4126.

Ji H, Smith L.M, Guilfoyle RA. 1994. Rapid isolation of cosmid insert DNA by triple-helix-mediated affinity capture. Genetic Analysis, Techniques and Applications. 11:43-7.

Ji H, Smith L.M. 1993. Rapid purification of double-stranded DNA by triple-helix-mediated affinity capture. Analytical Chemistry. 65:1323-8.

Ji H.M, Francisco T., Smith L.M, Guilfoyle R.A. 1996. Rapid restriction mapping of cosmids by sequence-specific triple-helix-mediated affinity capture. Genomics. 31:185-192.

Fitzgerald M.C, Skowron P., Vanetten J.L, Smith L.M, Mead D.A. 1992. Rapid shotgun cloning utilizing the two base recognition endonuclease CviJI. Nucleic Acids Research. 20:3753-3762.

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