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G

Giddings M.C, Severin J., Westphall M., Wu J.Z, Smith L.M. 1998. A software system for data analysis in automated DNA sequencing. Genome Research. 8:644-665.

Giddings MC, Brumley, Jr. RL, Haker M, Smith L.M. 1993. An adaptive, object oriented strategy for base calling in DNA sequence analysis. Nucleic Acids Research. 21:4530-40.

Gemperline D.C, Marshall R.S, Lee K.H, Zhao Q.Z, Hu W.M, McLoughlin F., Scalf M., Smith L.M, Vierstra R.D. 2019. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.

Gemperline D.C, Scalf M., Smith L.M, Vierstra R.D. 2016. Morpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine. Proteomics. 16:920-924.

F

Frutos A.G, Smith L.M, Corn R.M. 1998. Enzymatic ligation reactions of DNA "words" on surfaces for DNA computing. Journal of the American Chemical Society. 120:10277-10282.

Frutos A.G, Liu Q.H, Thiel A.J, Sanner A.MW, Condon A.E, Smith L.M, Corn R.M. 1997. Demonstration of a word design strategy for DNA computing on surfaces. Nucleic Acids Research. 25:4748-4757.

Frey B.L, Ladror D.T, Sondalle S.B, Krusemark C.J, Jue A.L, Coon J.J, Smith L.M. 2013. Chemical Derivatization of Peptide Carboxyl Groups for Highly Efficient Electron Transfer Dissociation. Journal of the American Society for Mass Spectrometry. 24:1710-1721.

Frey B.L, Lin Y., Westphall M.S, Smith L.M. 2005. Controlling gas-phase reactions for efficient charge reduction electrospray mass spectrometry of intact proteins. Journal of the American Society for Mass Spectrometry. 16:1876-1887.

Frey B.L, Krusemark C.J, Ledvina A.R, Coon J.J, Belshaw P.J, Smith L.M. 2008. Ion-ion reactions with fixed-charge modified proteins to produce ions in a single, very high charge state. International Journal of Mass Spectrometry. 276:136-143.

Freed JK, Shortreed MR, Kleefisch CJ, Smith L.M, Greene AS. 2008. Revealing the role of phosphatidylserine in shear stress-mediated protection in endothelial cells. Endothelium-Journal of Endothelial Cell Research. 15:225-230.

Fitzgerald MC, Smith L.M. 1995. Mass spectrometry of nucleic acids: the promise of matrix-assisted laser desorption-ionization (MALDI) mass spectrometry. Annual Review of Biophysics & Biomolecular Structure. 24:117-40.

Fitzgerald M.C, Zhu L., Smith L.M. 1993. The analysis of mock DNA sequencing reactions using matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry. 7:895-897.

Fitzgerald M.C, Parr G.R, Smith L.M. 1993. Basic matrices for the matrix-assisted laser desorption/ionization mass spectrometry of proteins and oligonucleotides. Analytical Chemistry. 65:3204-3211.

Fitzgerald M.C, Skowron P., Vanetten J.L, Smith L.M, Mead D.A. 1992. Rapid shotgun cloning utilizing the two base recognition endonuclease CviJI. Nucleic Acids Research. 20:3753-3762.

Fei Z.D, Smith L.M. 2000. Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry. 14:950-959.

Fei Z.D, Ono T., Smith L.M. 1998. MALDI-TOF mass spectrometric typing of single nucleotide polymorphisms with mass-tagged ddNTPs. Nucleic Acids Research. 26:2827-2828.

E

Ebeling D.D, Westphall M.S, Scalf M., Smith L.M. 2001. A cylindrical capacitor ionization source: droplet generation and controlled charge reduction for mass spectrometry. Rapid Communications in Mass Spectrometry. 15:401-5.

Ebeling D.D, Westphall M.S, Scalf M., Smith L.M. 2000. Corona discharge in charge reduction electrospray mass spectrometry. Analytical Chemistry. 72:5158-5161.

D

Drossman H., Luckey J.A, Kostichka A.J, Dcunha J., Smith L.M. 1990. High-speed separations of DNA sequencing reactions by capillary electrophoresis. Analytical Chemistry. 62:900-903.

Donnelly D.P, Rawlins C.M, DeHart C.J, Fornelli L, Schachner L.F, Lin Z, Lippens J.L, Aluri K.C, Sarin R, Chen B et al.. 2019. Best practices and benchmarks for intact protein analysis for top-down mass spectrometry. Nature methods. 16(7)

Denton D.D, Thiel A.J, Smith L.M, Bajikar S., White V., Ghodssi R., Fish G., McCaughan L.. 1994. Fabrication of microstructures for use in biological and optical applications. Proceedings - Electrochemical Society. 94-14:103-14.

Dai Y., Buxton K.E, Schaffer L.V, Miller R.M, Millikin R.J, Scalf M., Frey B.L, Shortreed M.R, Smith L.M. 2019. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database. Journal of Proteome Research. 18(10)

Dai Y, Kennedy-Darling J, Shortreed MR, Scalf M, Gasch AP, Smith L.M. 2017. Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins. Analytical Chemistry. 89:7841-7846.

Dai Y.X, Shortreed M.R, Scalf M., Frey B.L, Cesnik A.J, Solntsev S., Schaffer L.V, Smith L.M. 2017. Elucidating Escherichia coil Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database. Journal of Proteome Research. 16:4156-4165.

D'Cunha J., Berson B.J, Brumley, Jr. R.L, Wagner P.R, Smith L.M. 1990. An automated instrument for the performance of enzymatic DNA sequencing reactions. BioTechniques. 9:80-5,88-90.

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