Publications

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Journal Article
Miller R.M, Knoener R.A, Benner B.E, Frey B.L, Scalf M., Shortreed M.R, Sherer N.M, Smith L.M.  2022.  Discovery of Dehydroamino Acid Residues in the Capsid and Matrix Structural Proteins of HIV-1 br. Journal of Proteome Research. 21:993-1001.
Kennedy-Darling J., Guillen-Ahlers H., Shortreed M.R, Scalf M., Frey B.L, Kendziorski C., Olivier M., Gasch A.P, Smith L.M.  2014.  Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae. Journal of Proteome Research. 13:3810-3825.
Sheynkman G.M, Shortreed M.R, Frey B.L, Smith L.M.  2013.  Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq. Molecular & Cellular Proteomics. 12:2341-2353.
Guilfoyle RA, Smith L.M.  1994.  A direct selection strategy for shotgun cloning and sequencing in the bacteriophage M13. Nucleic Acids Research. 22:100-7.
Griffin TJ, Hall JG, Prudent JR, Smith L.M.  1999.  Direct genetic analysis by matrix-assisted laser desorption/ionization mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 96:6301-6306.
Guo Z, Guilfoyle RA, Thiel AJ, Wang R, Smith L.M.  1994.  Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Research. 22:5456-65.
Brow M.AD, Oldenburg M.C, Lyamichev V., Heisler L.M, Lyamicheva N., Hall J.G, Eagan N.J, Olive D.M, Smith L.M, Fors L. et al..  1996.  Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage. Journal of Clinical Microbiology. 34:3129-3137.
Liu R.R, Li Q.Y, Smith L.M.  2014.  Detection of Large Ions in Time-of-Flight Mass Spectrometry: Effects of Ion Mass and Acceleration Voltage on Microchannel Plate Detector Response. Journal of the American Society for Mass Spectrometry. 25:1374-1383.
Frutos A.G, Liu Q.H, Thiel A.J, Sanner A.MW, Condon A.E, Smith L.M, Corn R.M.  1997.  Demonstration of a word design strategy for DNA computing on surfaces. Nucleic Acids Research. 25:4748-4757.
Su X.P, Smith L.M.  2004.  Demonstration of a universal surface DNA computer. Nucleic Acids Research. 32:3115-3123.
Ebeling D.D, Westphall M.S, Scalf M., Smith L.M.  2001.  A cylindrical capacitor ionization source: droplet generation and controlled charge reduction for mass spectrometry. Rapid Communications in Mass Spectrometry. 15:401-5.
Baker SE, Lasseter TL, Smith L.M, Hamers R.J.  2002.  Covalently-linked adducts of single-walled nanotubes with biomolecules: Synthesis, hybridization, and biologically-directed surface assembly. Materials Research Society Symposium Proceedings. 737
Sun B, Colavita PE, Kim H, Lockett M, Marcus MS, Smith L.M, Hamers R.J.  2006.  Covalent Photochemical Functionalization of Amorphous Carbon Thin Films for Integrated Real-Time Biosensing. Langmuir. 22:9598-9605.
Strother T., Hamers R.J, Smith L.M.  2000.  Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces. Nucleic Acids Research. 28:3535-3541.
Ebeling D.D, Westphall M.S, Scalf M., Smith L.M.  2000.  Corona discharge in charge reduction electrospray mass spectrometry. Analytical Chemistry. 72:5158-5161.
Chen S., Phillips M.F, Cerrina F., Smith L.M.  2009.  Controlling Oligonucleotide Surface Density in Light-Directed DNA Array Fabrication. Langmuir. 25:6570-6575.
Frey B.L, Lin Y., Westphall M.S, Smith L.M.  2005.  Controlling gas-phase reactions for efficient charge reduction electrospray mass spectrometry of intact proteins. Journal of the American Society for Mass Spectrometry. 16:1876-1887.
Tang W, Zhu L, Smith L.M.  1997.  Controlling DNA Fragmentation in MALDI-MS by Chemical Modification. Analytical Chemistry. 69:302-312.
Scalf M., Westphall M.S, Krause J., Kaufman S.L, Smith L.M.  1999.  Controlling charge states of large ions. Science. 283:194-197.
Hilger R.T, Westphal M.S, Smith L.M.  2007.  Controlling charge on levitating drops. Analytical Chemistry. 79:6027-6030.
Schaffer L.V, Anderson L.C, Butcher D.S, Shortreed M.R, Miller R.M, Pavelec C., Smith L.M.  2021.  Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data. Journal of Proteome Research. 20:317-325.
Zaidan N.Z, Walker K.J, Brown J.E, Schaffer L.V, Scalf M., Shortreed M.R, Iyer G., Smith L.M, Sridharan R..  2018.  Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance. Stem Cell Reports. 10:627-641.
Moradian A., Scalf M., Westphall M.S, Smith L.M, Douglas D.J.  2002.  Collision cross sections of gas phase DNA ions. International Journal of Mass Spectrometry. 219:161-170.
Brow M.AD, Oldenburg M.C, Lyamichev V., Heisler L.M, Grotelueschen J., Lyamicheva N., Kozyavkin S., Fors L., Dahlberg J.E, Smith L.M et al..  1996.  The Cleavase Fragment Length Polymorphism (CFLP) assay. Biochemica. 1:14-15.
Cai W., Lin Z., Strother T., Smith L.M, Hamers R.J.  2002.  Chemical modification and patterning of iodine-terminated silicon surfaces using visible light. Journal of Physical Chemistry B. 106:2656-2664.

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