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Chen Y., Shortreed M.R, Olivier M., Smith L.M. 2005. Parallel single nucleotide polymorphism genotyping by surface invasive cleavage with universal detection. Analytical Chemistry. 77:2400-2405.

Smith L.M, McConnell H.M, Smith B.A, Parce J.W. 1981. Pattern photobleaching of fluorescent lipid vesicles using polarized laser light. Biophysical Journal. 33:139-146.

Sanders JZ, MacKellar SL, Otto BJ, Dodd CT, Heiner C, Hood LE, Smith L.M. 1990. Peak height variability and accuracy in automated DNA sequencing. Struct. Methods, Proc. Conversation Discip. Biomol. Stereodyn., 6th. 1:89-102.

Strother T., Knickerbocker T., Russell J.N, Butler J.E, Smith L.M, Hamers R.J. 2002. Photochemical functionalization of diamond films. Langmuir. 18:968-971.

Holden M.T, Carter M.CD, Wu C.H, Wolfer J., Codner E., Sussman M.R, Lynn D.M, Smith L.M. 2015. Photolithographic Synthesis of High-Density DNA and RNA Arrays on Flexible, Transparent, and Easily Subdivided Plastic Substrates. Analytical Chemistry. 87:11420-11428.

Chen S.Y, Smith L.M. 2009. Photopatterned Thiol Surfaces for Biomolecule Immobilization. Langmuir. 25:12275-12282.

Tang W, Nelson CM, Zhu L, Smith L.M. 1997. Positive ion formation in the ultraviolet matrix- assisted laser desorption/ionization analysis of oligonucleotides by using 2,5-dihydroxybenzoic acid. Journal of the American Society for Mass Spectrometry. 8:218-224.

Chen X., Lu L., Mayer K.S, Scalf M., Qian S., Lomax A., Smith L.M, Zhong X.. 2016. POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Elife. 5

Yang W, Auciello O, Butler JE, Cai W, Carlisle JA, Gerbi JE, Gruen DM, Knickerbocker T, Lasseter TL, Russell, Jr. JN et al.. 2002. Preparation and electrochemical characterization of DNA-modified nanocrystalline diamond films. Materials Research Society Symposium Proceedings. 737

Leduc R.D, Schwammle V., Shortreed M.R, Cesnik A.J, Solntsev S.K, Shaw J.B, Martin M.J, Vizcaino J.A, Alpi E., Danis P. et al.. 2018. ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 17:1321-1325.

Liu Q., Frutos A.G, Wang L., Thiel A.J, Gillmor S.D, Strother C.T, Condon A.E, Corn R.M, Lagally M.G, Smith L.M. 1999. Progress toward demonstration of a surface based DNA computation: a one word approach to solve a model satisfiability problem. Biosystems. 52:25-33.

Miller R.M, Ibrahim K., Smith L.M. 2021. ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics. Journal of Proteome Research. 20:1936-1942.

Li Q.Y, Chang Z., Oliveira G., Xiong M., Smith L.M, Frey B.L, Welham N.V. 2016. Protein turnover during in vitro tissue engineering. Biomaterials. 81:104-113.

Smith L.M, Kelleher N.L, Ge Y., Down PConsortium. 2013. Proteoform: a single term describing protein complexity. Nature Methods. 10:186-187.

Cesnik A.J, Shortreed M.R, Schaffer L.V, Knoener R.A, Frey B.L, Scalf M., Solntsev S.K, Dai Y.X, Gasch A.P, Smith L.M. 2018. Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. 17:568-578.

Smith L.M, Kelleher N.L. 2018. Proteoforms as the next proteomics currency. Science. 359:1106-1107.

Sheynkman G.M, Shortreed M.R, Cesnik A.J, Smith L.M. 2016. Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.

Welham N.V, Chang Z., Smith L.M, Frey B.L. 2013. Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry. Biomaterials. 34:669-676.

Gemperline D.C, Marshall R.S, Lee K.H, Zhao Q.Z, Hu W.M, McLoughlin F., Scalf M., Smith L.M, Vierstra R.D. 2019. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.

Li Q.Y, Uygun B.E, Geerts S., Ozer S., Scalf M., Gilpin S.E, Ott H.C, Yarmush M.L, Smith L.M, Welham N.V et al.. 2016. Proteomic analysis of naturally-sourced biological scaffolds. Biomaterials. 75:37-46.

Yau B., Naghiloo S., Diaz-Vegas A., Carr A.V, Van Gerwen J., Needham E.J, Jevon D., Chen S.Y, Hoehn K.L, Brandon A.E et al.. 2021. Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet. Iscience. 24

Proffitt J.M, Glenn J., Cesnik A.J, Jadhav A., Shortreed M.R, Smith L.M, Kavanagh K., Cox L.A, Olivier M.. 2017. Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys. Bmc Genomics. 18

Johnson A.F, Wang R.F, Ji H.M, Chen D.H, Guilfoyle R.A, Smith L.M. 1996. Purification of single-stranded M13 DNA by cooperative triple-helix-mediated affinity capture. Analytical Biochemistry. 234:83-95.

Plubell D.L, Kall L., Webb-Robertson B.J, Bramer L.M, Ives A., Kelleher N.L, Smith L.M, Montine T.J, Wu C.C, MacCoss M.J. 2022. Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? br Journal of Proteome Research. 21:891-898.

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Nie B., Shortreed M.R, Smith L.M. 2006. Quantitative detection of individual cleaved DNA molecules on surfaces using gold nanoparticles and scanning electron microscope imaging. Analytical Chemistry. 78:1528-1534.

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