Publications

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Sanders JZ, MacKellar SL, Otto BJ, Dodd CT, Heiner C, Hood LE, Smith L.M.  1990.  Peak height variability and accuracy in automated DNA sequencing. Struct. Methods, Proc. Conversation Discip. Biomol. Stereodyn., 6th. 1:89-102.
Saracco S.A, Hansson M., Scalf M., Walker J.M, Smith L.M, Vierstra R.D.  2009.  Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Plant Journal. 59:344-358.
Scalf M., Westphall M.S, Krause J., Kaufman S.L, Smith L.M.  1999.  Controlling charge states of large ions. Science. 283:194-197.
Scalf M., Westphall M.S, Smith L.M.  2000.  Charge reduction electrospray mass spectrometry. Analytical Chemistry. 72:52-60.
Schaffer L.V, Shortreed M.R, Cesnik A.J, Frey B.L, Solntsev S.K, Scalf M., Smith L.M.  2018.  Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families. Analytical Chemistry. 90:1325-1333.
Sheynkman GM, Shortreed MR, Frey BL, Scalf M, Smith L.M.  2014.  Large-Scale Mass Spectrometric Detection of Variant Peptides Resulting from Nonsynonymous Nucleotide Differences. Journal of Proteome Research. 13:228-240.
Sheynkman G.M, Shortreed M.R, Cesnik A.J, Smith L.M.  2016.  Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.
Sheynkman G.M, Shortreed M.R, Frey B.L, Smith L.M.  2013.  Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq. Molecular & Cellular Proteomics. 12:2341-2353.
Shortreed M.R, Wenger C.D, Frey B.L, Sheynkman G.M, Scalf M., Keller M.P, Attie A.D, Smith L.M.  2015.  Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. Journal of Proteome Research. 14:4714-4720.
Shortreed M.R, Lamos S.M, Frey B.L, Phillips M.F, Patel M., Belshaw P.J, Smith L.M.  2006.  Ionizable isotopic labeling reagent for relative quantification of amine metabolites by mass spectrometry. Analytical Chemistry. 78:6398-6403.
Shortreed M.R, Frey B.L, Scalf M., Knoener R.A, Cesnik A.J, Smith L.M.  2016.  Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements. Journal of Proteome Research. 15:1213-1221.
Shortreed M.R, Chang S.B, Hong D.G, Phillips M., Campion B., Tulpan D.C, Andronescu M., Condon A., Hoos H.H, Smith L.M.  2005.  A thermodynamic approach to designing structure-free combinatorial DNA word sets. Nucleic Acids Research. 33:4965-4977.
Smith L.M, Petty H.R, Parham P., McConnell H.M.  1982.  Cell surface properties of HLA antigens on Epstein-Barr virus-transformed cell lines. Proceedings of the National Academy of Sciences of the United States of America-Biological Sciences. 79:608-612.
Smith L.M, Shortreed MR, Olivier M.  2011.  To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation. Analyst. 136:3060-3065.
Smith L.M.  1988.  Fluorescence-based automated DNA sequence analysis. Genet. Eng. (N. Y.). 10:91-108.
Smith L.M, McConnell H.M, Smith B.A, Parce J.W.  1981.  Pattern photobleaching of fluorescent lipid vesicles using polarized laser light. Biophysical Journal. 33:139-146.
Smith L.M.  2006.  Nanostructures - The manifold faces of DNA. Nature. 440:283-284.
Smith L.M, J. Parce W, Smith BA, McConnell HM.  1979.  Antibodies bound to lipid haptens in model membranes diffuse as rapidly as the lipids themselves. Proceedings of the National Academy of Sciences of the United States of America. 76:4177-9.
Smith L.M.  1993.  The Future of DNA-Sequencing. Science. 262:530-532.
Smith L.M, Kaiser RJ, Sanders JZ, Hood LE.  1987.  The synthesis and use of fluorescent oligonucleotides in DNA sequence analysis. Methods in Enzymology. 155:260-301.
Smith L.M.  1981.  The Lateral and Rotational Motion of Membrane Components. 8115832:168p..
Smith L.M, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, Heiner C, Kent SBH, Hood LE.  1986.  Fluorescence detection in automated DNA sequence analysis. Nature. 321:674-9.

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