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P

Pellitteri-Hahn M.C, Halligan B.D, Scalf M., Smith L.M, Hickey W.J. 2011. Quantitative proteomic analysis of the chemolithoautotrophic bacterium Nitrosomonas europaea: Comparison of growing- and energy-starved cells. Journal of Proteomics. 74:411-419.

Petty HR, Smith L.M, Fearon DT, McConnell HM. 1980. Lateral distribution and diffusion of the C3b receptor of complement, HLA antigens, and lipid probes in peripheral blood leukocytes. Proceedings of the National Academy of Sciences of the United States of America. 77:6587-91.

Phillips MF, Lockett MR, Rodesch MJ, Shortreed MR, Cerrina F, Smith L.M. 2008. In situ oligonucleotide synthesis on carbon materials: stable substrates for microarray fabrication. Nucleic Acids Research. 36

Proffitt J.M, Glenn J., Cesnik A.J, Jadhav A., Shortreed M.R, Smith L.M, Kavanagh K., Cox L.A, Olivier M.. 2017. Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys. Bmc Genomics. 18

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Qin H., Kim H.S, Blick R.H, Westphall M.S, Smith L.M. 2007. Subthreshold field emission from thin silicon membranes. Applied Physics Letters. 91

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Rabaglia M.E, Gray-Keller M.P, Frey B.L, Shortreed M.R, Smith L.M, Attie A.D. 2005. alpha-Ketoisocaproate-induced hypersecretion of insulin by islets from diabetes-susceptible mice. American Journal of Physiology - Endocrinology & Metabolism. 289:E218-E224.

Rank D, Smith L.M. 1996. Automated DNA sequencers: the next generation. Optics and Photonics News. 7:29-33.

Rhoads T.W, Rose C.M, Bailey D.J, Riley N.M, Molden R.C, Nestler A.J, Merrill A.E, Smith L.M, Hebert A.S, Westphall M.S et al.. 2014. Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics. Analytical Chemistry. 86:2314-2319.

Rolfs Z., Solntsev S.K, Shortreed M.R, Frey B.L, Smith L.M. 2018. Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion. Journal of Proteome Research. 18(1):349-358.

Russell JD, Hilger RT, Ladror DT, Tervo MA, Scalf M, Shortreed MR, Coon J.J, Smith L.M. 2011. Parallel Detection of Intrinsic Fluorescence from Peptides and Proteins for Quantification during Mass Spectrometric Analysis. Analytical Chemistry. 83:2187-2193.

Russell J.N, Butler J.E, Hamers R.J, Smith L.M, Bent S.F. 2003. Creating Chemical and Biological Diamond Interfaces.

Russell J.D, Scalf M., Book A.J, Ladror D.T, Vierstra R.D, Smith L.M, Coon J.J. 2013. Characterization and Quantification of Intact 26S Proteasome Proteins by Real-Time Measurement of Intrinsic Fluorescence Prior to Top-down Mass Spectrometry. Plos One. 8

Rytz T.C, Miller M.J, McLoughlin F., Augustine R.C, Marshall R.S, Juan Y.T, Charng Y.Y, Scalf M., Smith L.M, Vierstra R.D. 2018. SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress. Plant Cell. 30:1077-1099.

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Sanders JZ, MacKellar SL, Otto BJ, Dodd CT, Heiner C, Hood LE, Smith L.M. 1990. Peak height variability and accuracy in automated DNA sequencing. Struct. Methods, Proc. Conversation Discip. Biomol. Stereodyn., 6th. 1:89-102.

Saracco S.A, Hansson M., Scalf M., Walker J.M, Smith L.M, Vierstra R.D. 2009. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Plant Journal. 59:344-358.

Scalf M., Westphall M.S, Krause J., Kaufman S.L, Smith L.M. 1999. Controlling charge states of large ions. Science. 283:194-197.

Scalf M., Westphall M.S, Smith L.M. 2000. Charge reduction electrospray mass spectrometry. Analytical Chemistry. 72:52-60.

Schaffer L.V, Millikin R.J, Miller R.M, Anderson L.C, Fellers R.T, Ge Y., Kelleher N.L, LeDuc R.D, Liu X., Payne S.H et al.. 2019. Identification and Quantification of Proteoforms by Mass Spectrometry. Proteomics.

Schaffer L.V, Tucholski T., Shortreed M.R, Ge Y., Smith L.M. 2019. Intact-Mass Analysis Facilitating the Identification of Large Human Heart Proteoforms. Analytical Chemistry. 91(17)

Schaffer L.V, Shortreed M.R, Cesnik A.J, Frey B.L, Solntsev S.K, Scalf M., Smith L.M. 2018. Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families. Analytical Chemistry. 90:1325-1333.

Schaffer L.V, Rensvold J.W, Shortreed M.R, Cesnik A.J, Jochem A., Scalf M., Frey B.L, Pagliarini D.J, Smith L.M. 2018. Identification and quantification of murine mitochondrial proteoforms using an integrated top-down and intact-mass strategy. Journal of Proteome Research. 17(10):3526-3536.

Sheynkman GM, Shortreed MR, Frey BL, Scalf M, Smith L.M. 2014. Large-Scale Mass Spectrometric Detection of Variant Peptides Resulting from Nonsynonymous Nucleotide Differences. Journal of Proteome Research. 13:228-240.

Sheynkman G.M, Shortreed M.R, Cesnik A.J, Smith L.M. 2016. Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.

Sheynkman G.M, Shortreed M.R, Frey B.L, Smith L.M. 2013. Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq. Molecular & Cellular Proteomics. 12:2341-2353.

Shortreed M.R, Wenger C.D, Frey B.L, Sheynkman G.M, Scalf M., Keller M.P, Attie A.D, Smith L.M. 2015. Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. Journal of Proteome Research. 14:4714-4720.

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