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E

Solntsev S.K, Shortreed M.R, Frey B.L, Smith L.M. 2018. Enhanced Global Post-translational Modification Discovery with MetaMorpheus. Journal of Proteome Research. 17:1844-1851.

Shortreed M.R, Frey B.L, Scalf M., Knoener R.A, Cesnik A.J, Smith L.M. 2016. Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements. Journal of Proteome Research. 15:1213-1221.

Buxton K.E, Kennedy-Darling J., Shortreed M.R, Zaidan N.Z, Olivier M., Scalf M., Sridharan R., Smith L.M. 2017. Elucidating Protein-DNA Interactions in Human Alphoid Chromatin via Hybridization Capture and Mass Spectrometry. Journal of Proteome Research. 16:3433-3442.

Dai Y.X, Shortreed M.R, Scalf M., Frey B.L, Cesnik A.J, Solntsev S., Schaffer L.V, Smith L.M. 2017. Elucidating Escherichia coil Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database. Journal of Proteome Research. 16:4156-4165.

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Kennedy-Darling J., Guillen-Ahlers H., Shortreed M.R, Scalf M., Frey B.L, Kendziorski C., Olivier M., Gasch A.P, Smith L.M. 2014. Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae. Journal of Proteome Research. 13:3810-3825.

Sheynkman G.M, Shortreed M.R, Frey B.L, Smith L.M. 2013. Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq. Molecular & Cellular Proteomics. 12:2341-2353.

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Zaidan N.Z, Walker K.J, Brown J.E, Schaffer L.V, Scalf M., Shortreed M.R, Iyer G., Smith L.M, Sridharan R.. 2018. Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance. Stem Cell Reports. 10:627-641.

A

Chen S.Y, Zheng T., Shortreed M.R, Alexander C., Smith L.M. 2007. Analysis of cell surface carbohydrate expression patterns in normal and tumorigenic human breast cell lines using lectin arrays. Analytical Chemistry. 79:5698-5702.

Rabaglia M.E, Gray-Keller M.P, Frey B.L, Shortreed M.R, Smith L.M, Attie A.D. 2005. alpha-Ketoisocaproate-induced hypersecretion of insulin by islets from diabetes-susceptible mice. American Journal of Physiology - Endocrinology & Metabolism. 289:E218-E224.

Guillen-Ahlers H., Shortreed M.R, Smith L.M, Olivier M.. 2014. Advanced methods for the analysis of chromatin-associated proteins. Physiological Genomics. 46:441-447.

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