Publications

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Miller R.M, Knoener R.A, Benner B.E, Frey B.L, Scalf M., Shortreed M.R, Sherer N.M, Smith L.M.  2022.  Discovery of Dehydroamino Acid Residues in the Capsid and Matrix Structural Proteins of HIV-1 br. Journal of Proteome Research. 21:993-1001.
Jarecki JL, Frey BL, Smith L.M, Stretton AO.  2011.  Discovery of Neuropeptides in the Nematode Ascaris suum by Database Mining and Tandem Mass Spectrometry. Journal of Proteome Research. 10:3098-3106.
Mouradian S., Skogen J.W, Dorman F.D, Zarrin F., Kaufman S.L, Smith L.M.  1997.  DNA analysis using an electrospray scanning mobility particle sizer. Analytical Chemistry. 69:919-925.
Lin Z., Strother T., Cai W., Cao X.P, Smith L.M, Hamers R.J.  2002.  DNA attachment and hybridization at the silicon (100) surface. Langmuir. 18:788-796.
Liu Q., Wang L., Frutos A.G, Condon A.E, Corn R.M, Smith L.M.  2000.  DNA computing on surfaces. Nature. 403:175-9.
Liu Q.H, Frutos A.G, Thiel A.J, Corn R.M, Smith L.M.  1998.  DNA computing on surfaces: Encoding information at the single base level. Journal of Computational Biology. 5:269-278.
Wang L.M, Hall J.G, Lu M.C, Liu Q.H, Smith L.M.  2001.  A DNA computing readout operation based on structure-specific cleavage. Nature Biotechnology. 19:1053-1059.
Smith L.M.  1993.  DNA electrophoresis. Current Opinion in Biotechnology. 4:37-40.
Smith L.M.  1989.  DNA sequence analysis: past, present, and future. American Biotechnology Laboratory. 7:10,12,14,16-18,20-5.
Hou W.Y, Smith L.M.  1994.  DNA sequencing with a hexamer string primer and dye-labeled terminators. Analytical Biochemistry. 221:136-141.
Knickerbocker T., Strother T., Schwartz M.P, Russell J.N, Butler J., Smith L.M, Hamers R.J.  2003.  DNA-modified diamond surfaces. Langmuir. 19:1938-1942.
Yang W.S, Auciello O., Butler J.E, Cai W., Carlisle J.A, Gerbi J., Gruen D.M, Knickerbocker T., Lasseter T.L, Russell J.N et al..  2002.  DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates. Nature Materials. 1:253-257.
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Mehdi S.Q, Recktenwald D.J, Smith L.M, Li G.C, Armour E.P, Hahn G.M.  1984.  Effect of hyperthermia on murine cell surface histocompatibility antigens. Cancer Research. 44:3394-3397.
Murray J.K, Farooqi B., Sadowsky J.D, Scalf M., Freund W.A, Smith L.M, Chen J.D, Gellman S.H.  2005.  Efficient synthesis of a beta-peptide combinatorial library with microwave irradiation. Journal of the American Chemical Society. 127:13271-13280.
Dai Y.X, Shortreed M.R, Scalf M., Frey B.L, Cesnik A.J, Solntsev S., Schaffer L.V, Smith L.M.  2017.  Elucidating Escherichia coil Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database. Journal of Proteome Research. 16:4156-4165.
Buxton K.E, Kennedy-Darling J., Shortreed M.R, Zaidan N.Z, Olivier M., Scalf M., Sridharan R., Smith L.M.  2017.  Elucidating Protein-DNA Interactions in Human Alphoid Chromatin via Hybridization Capture and Mass Spectrometry. Journal of Proteome Research. 16:3433-3442.
Shortreed M.R, Frey B.L, Scalf M., Knoener R.A, Cesnik A.J, Smith L.M.  2016.  Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements. Journal of Proteome Research. 15:1213-1221.
Knoener R.A, Becker J.T, Scalf M., Sherer N.M, Smith L.M.  2017.  Elucidating the in vivo interactome of HIV-1 RNA by hybridization capture and mass spectrometry. Scientific Reports. 7
Guo Z., Liu Q.H, Smith L.M.  1997.  Enhanced discrimination of single nucleotide polymorphisms by artificial mismatch hybridization. Nature Biotechnology. 15:331-335.
Solntsev S.K, Shortreed M.R, Frey B.L, Smith L.M.  2018.  Enhanced Global Post-translational Modification Discovery with MetaMorpheus. Journal of Proteome Research. 17:1844-1851.
Miller R.M, Jordan B., Mehlferber M.M, Jeffery E.D, Chatzipantsiou C., Kaur S., Millikin R.J, Dai Y.X, Tiberi S., Castaldi P.J et al..  2022.  Enhanced protein isoform characterization through long-read proteogenomics. Genome Biology. 23
Frutos A.G, Smith L.M, Corn R.M.  1998.  Enzymatic ligation reactions of DNA "words" on surfaces for DNA computing. Journal of the American Chemical Society. 120:10277-10282.
Schaffer L.V, Shortreed M.R, Cesnik A.J, Frey B.L, Solntsev S.K, Scalf M., Smith L.M.  2018.  Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families. Analytical Chemistry. 90:1325-1333.
Murray JK, Sadowsky JD, Scalf M, Smith L.M, Tomita Y, Gellman S.H.  2008.  Exploration of structure - Activity relationships among foldamer ligands for a specific protein binding site via parallel and split-and-mix library synthesis. Journal of Combinatorial Chemistry. 10:204-215.

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