Publications
Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome during Photomorphogenesis. Molecular Plant. 10:846-865.
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2017. Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins. Analytical Chemistry. 89:7841-7846.
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2017. Parallel DNA Synthesis on Poly(ethylene terephthalate). Chembiochem. 18:1914-1916.
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2017. .
2017. Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements. Journal of Proteome Research. 15:1213-1221.
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2016. Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy. Journal of Proteome Research. 15:800-808.
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2016. HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae. Genomics. 107:267-273.
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2016. Morpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine. Proteomics. 16:920-924.
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2016. Protein turnover during in vitro tissue engineering. Biomaterials. 81:104-113.
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2016. Proteomic analysis of naturally-sourced biological scaffolds. Biomaterials. 75:37-46.
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2016. Bioengineered vocal fold mucosa for voice restoration. Science Translational Medicine. 7
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2015. Carbon Substrates: A Stable Foundation for Biomolecular Arrays. Annu. Rev. Anal. Chem.. 8:263-285.
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2015. Formaldehyde Crosslinking: A Tool for the Study of Chromatin Complexes. Journal of Biological Chemistry. 290:26404-26411.
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2015. Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. Journal of Proteome Research. 14:4714-4720.
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2015. Photolithographic Synthesis of High-Density DNA and RNA Arrays on Flexible, Transparent, and Easily Subdivided Plastic Substrates. Analytical Chemistry. 87:11420-11428.
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2015. Advanced methods for the analysis of chromatin-associated proteins. Physiological Genomics. 46:441-447.
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2014. Detection of Large Ions in Time-of-Flight Mass Spectrometry: Effects of Ion Mass and Acceleration Voltage on Microchannel Plate Detector Response. Journal of the American Society for Mass Spectrometry. 25:1374-1383.
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2014. Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae. Journal of Proteome Research. 13:3810-3825.
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2014. Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework. Journal of Proteome Research. 13:5898-5908.
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2014. Large-Scale Mass Spectrometric Detection of Variant Peptides Resulting from Nonsynonymous Nucleotide Differences. Journal of Proteome Research. 13:228-240.
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2014. Measuring the Formaldehyde Protein-DNA Cross-Link Reversal Rate. Analytical Chemistry. 86:5678-5681.
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2014. Methylation of yeast ribosomal protein S2 is elevated during stationary phase growth conditions. Biochemical and Biophysical Research Communications. 445:535-541.
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2014.