Publications

Export 85 results:
Author Title [ Type(Desc)] Year
Filters: First Letter Of Last Name is K  [Clear All Filters]
Journal Article
Guilfoyle RA, Leeck CL, K. Kroening D, Smith L.M, Guo Z.  1997.  Ligation-mediated PCR amplification of specific fragments from a Class-II restriction endonuclease. Nucleic Acids Research. 25:1854-1858.
Aguilar-Hernandez V., Kim D.Y, Stankey R.J, Scalf M., Smith L.M, Vierstra R.D.  2017.  Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome during Photomorphogenesis. Molecular Plant. 10:846-865.
Kennedy-Darling J, Smith L.M.  2014.  Measuring the Formaldehyde Protein-DNA Cross-Link Reversal Rate. Analytical Chemistry. 86:5678-5681.
Carr A.V, Frey B.L, Scalf M., Cesnik A.J, Rolfs Z., Pike K.A, Yang B., Keller M.P, Jarrard D.F, Shortreed M.R et al..  2022.  MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses. Journal of Proteome Research. 21:410-419.
Lamos S.M, Krusemark C.J, McGee C.J, Scalf M., Smith L.M, Belshaw P.J.  2006.  Mixed isotope photoaffinity reagents for identification of small-molecule targets by mass spectrometry. Angewandte Chemie-International Edition. 45:4329-4333.
Krusemark C.J, Frey B.L, Belshaw P.J, Smith L.M.  2009.  Modifying the Charge State Distribution of Proteins in Electrospray Ionization Mass Spectrometry by Chemical Derivatization. Journal of the American Society for Mass Spectrometry. 20:1617-1625.
Berggren W.T, Takova T., Olson M.C, Eis P.S, Kwiatkowski R.W, Smith L.M.  2002.  Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection. Analytical Chemistry. 74:1745-1750.
Kennedy-Darling J., Holden M.T, Shortreed M.R, Smith L.M.  2014.  Multiplexed Programmable Release of Captured DNA. Chembiochem. 15:2353-2356.
Dai Y, Kennedy-Darling J, Shortreed MR, Scalf M, Gasch AP, Smith L.M.  2017.  Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins. Analytical Chemistry. 89:7841-7846.
Brow M.AD, Oldenburg M.C, Lyamichev V., Heisler L.M, Grotelueschen J., Lyamicheva N., Kozyavkin S., Fors L., Dahlberg J., Smith L.M et al..  1996.  Mutation detection by cleavase fragment length polymorphism. Focus. 18:2-5.
Kim S.H, Stiles S.G, Feichtmeier J.M, Ramesh N., Zhan L.H, Scalf M.A, Smith L.M, Pandey U.B, Tibbetts R.S.  2018.  Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS. Human Molecular Genetics. 27:322-337.
Strother T., Knickerbocker T., Russell J.N, Butler J.E, Smith L.M, Hamers R.J.  2002.  Photochemical functionalization of diamond films. Langmuir. 18:968-971.
Yang W, Auciello O, Butler JE, Cai W, Carlisle JA, Gerbi JE, Gruen DM, Knickerbocker T, Lasseter TL, Russell, Jr. JN et al..  2002.  Preparation and electrochemical characterization of DNA-modified nanocrystalline diamond films. Materials Research Society Symposium Proceedings. 737
Leduc R.D, Schwammle V., Shortreed M.R, Cesnik A.J, Solntsev S.K, Shaw J.B, Martin M.J, Vizcaino J.A, Alpi E., Danis P. et al..  2018.  ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 17:1321-1325.
Smith L.M, Kelleher N.L, Ge Y., Down PConsortium.  2013.  Proteoform: a single term describing protein complexity. Nature Methods. 10:186-187.
Cesnik A.J, Shortreed M.R, Schaffer L.V, Knoener R.A, Frey B.L, Scalf M., Solntsev S.K, Dai Y.X, Gasch A.P, Smith L.M.  2018.  Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. 17:568-578.
Smith L.M, Kelleher N.L.  2018.  Proteoforms as the next proteomics currency. Science. 359:1106-1107.
Yau B., Naghiloo S., Diaz-Vegas A., Carr A.V, Van Gerwen J., Needham E.J, Jevon D., Chen S.Y, Hoehn K.L, Brandon A.E et al..  2021.  Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet. Iscience. 24
Yau B., Naghiloo S., Diaz-Vegas A., Carr A.V, Van Gerwen J., Needham E.J, Jevon D., Chen S.Y, Hoehn K.L, Brandon A.E et al..  2021.  Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet. Iscience. 24
Proffitt J.M, Glenn J., Cesnik A.J, Jadhav A., Shortreed M.R, Smith L.M, Kavanagh K., Cox L.A, Olivier M..  2017.  Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys. Bmc Genomics. 18
Plubell D.L, Kall L., Webb-Robertson B.J, Bramer L.M, Ives A., Kelleher N.L, Smith L.M, Montine T.J, Wu C.C, MacCoss M.J.  2022.  Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? br Journal of Proteome Research. 21:891-898.
Plubell D.L, Kall L., Webb-Robertson B.J, Bramer L.M, Ives A., Kelleher N.L, Smith L.M, Montine T.J, Wu C.C, MacCoss M.J.  2022.  Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? br Journal of Proteome Research. 21:891-898.
Freed JK, Shortreed MR, Kleefisch CJ, Smith L.M, Greene AS.  2008.  Revealing the role of phosphatidylserine in shear stress-mediated protection in endothelial cells. Endothelium-Journal of Endothelial Cell Research. 15:225-230.
Wu C.H, Chen S.Y, Shortreed M.R, Kreitinger G.M, Yuan Y., Frey B.L, Zhang Y., Mirza S., Cirillo L.A, Olivier M. et al..  2011.  Sequence-Specific Capture of Protein-DNA Complexes for Mass Spectrometric Protein Identification. Plos One. 6
Peelen D., Kodoyianni V., Lee J., Zheng T., Shortreed M.R, Smith L.M.  2006.  Specific capture of mammalian cells by cell surface receptor binding to ligand immobilized on gold thin films. Journal of Proteome Research. 5:1580-1585.

Pages