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Mandir JB, Lockett MR, Phillips MF, Allawi HT, Lyamichev VI, Smith L.M. 2009. Rapid Determination of RNA Accessible Sites by Surface Plasmon Resonance Detection of Hybridization to DNA Arrays. Analytical Chemistry. 81:8949-8956.

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Miller M.J, Scalf M., Rytz T.C, Hubler S.L, Smith L.M, Vierstra R.D. 2013. Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation in Arabidopsis. Molecular & Cellular Proteomics. 12:449-463.

Pellitteri-Hahn M.C, Halligan B.D, Scalf M., Smith L.M, Hickey W.J. 2011. Quantitative proteomic analysis of the chemolithoautotrophic bacterium Nitrosomonas europaea: Comparison of growing- and energy-starved cells. Journal of Proteomics. 74:411-419.

Nie B., Shortreed M.R, Smith L.M. 2006. Quantitative detection of individual cleaved DNA molecules on surfaces using gold nanoparticles and scanning electron microscope imaging. Analytical Chemistry. 78:1528-1534.

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Plubell D.L, Kall L., Webb-Robertson B.J, Bramer L.M, Ives A., Kelleher N.L, Smith L.M, Montine T.J, Wu C.C, MacCoss M.J. 2022. Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? br Journal of Proteome Research. 21:891-898.

Johnson A.F, Wang R.F, Ji H.M, Chen D.H, Guilfoyle R.A, Smith L.M. 1996. Purification of single-stranded M13 DNA by cooperative triple-helix-mediated affinity capture. Analytical Biochemistry. 234:83-95.

Proffitt J.M, Glenn J., Cesnik A.J, Jadhav A., Shortreed M.R, Smith L.M, Kavanagh K., Cox L.A, Olivier M.. 2017. Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys. Bmc Genomics. 18

Yau B., Naghiloo S., Diaz-Vegas A., Carr A.V, Van Gerwen J., Needham E.J, Jevon D., Chen S.Y, Hoehn K.L, Brandon A.E et al.. 2021. Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet. Iscience. 24

Li Q.Y, Uygun B.E, Geerts S., Ozer S., Scalf M., Gilpin S.E, Ott H.C, Yarmush M.L, Smith L.M, Welham N.V et al.. 2016. Proteomic analysis of naturally-sourced biological scaffolds. Biomaterials. 75:37-46.

Gemperline D.C, Marshall R.S, Lee K.H, Zhao Q.Z, Hu W.M, McLoughlin F., Scalf M., Smith L.M, Vierstra R.D. 2019. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.

Welham N.V, Chang Z., Smith L.M, Frey B.L. 2013. Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry. Biomaterials. 34:669-676.

Sheynkman G.M, Shortreed M.R, Cesnik A.J, Smith L.M. 2016. Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.

Smith L.M, Kelleher N.L. 2018. Proteoforms as the next proteomics currency. Science. 359:1106-1107.

Cesnik A.J, Shortreed M.R, Schaffer L.V, Knoener R.A, Frey B.L, Scalf M., Solntsev S.K, Dai Y.X, Gasch A.P, Smith L.M. 2018. Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. 17:568-578.

Smith L.M, Kelleher N.L, Ge Y., Down PConsortium. 2013. Proteoform: a single term describing protein complexity. Nature Methods. 10:186-187.

Li Q.Y, Chang Z., Oliveira G., Xiong M., Smith L.M, Frey B.L, Welham N.V. 2016. Protein turnover during in vitro tissue engineering. Biomaterials. 81:104-113.

Miller R.M, Ibrahim K., Smith L.M. 2021. ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics. Journal of Proteome Research. 20:1936-1942.

Liu Q., Frutos A.G, Wang L., Thiel A.J, Gillmor S.D, Strother C.T, Condon A.E, Corn R.M, Lagally M.G, Smith L.M. 1999. Progress toward demonstration of a surface based DNA computation: a one word approach to solve a model satisfiability problem. Biosystems. 52:25-33.

Leduc R.D, Schwammle V., Shortreed M.R, Cesnik A.J, Solntsev S.K, Shaw J.B, Martin M.J, Vizcaino J.A, Alpi E., Danis P. et al.. 2018. ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 17:1321-1325.

Yang W, Auciello O, Butler JE, Cai W, Carlisle JA, Gerbi JE, Gruen DM, Knickerbocker T, Lasseter TL, Russell, Jr. JN et al.. 2002. Preparation and electrochemical characterization of DNA-modified nanocrystalline diamond films. Materials Research Society Symposium Proceedings. 737

Chen X., Lu L., Mayer K.S, Scalf M., Qian S., Lomax A., Smith L.M, Zhong X.. 2016. POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Elife. 5

Tang W, Nelson CM, Zhu L, Smith L.M. 1997. Positive ion formation in the ultraviolet matrix- assisted laser desorption/ionization analysis of oligonucleotides by using 2,5-dihydroxybenzoic acid. Journal of the American Society for Mass Spectrometry. 8:218-224.

Chen S.Y, Smith L.M. 2009. Photopatterned Thiol Surfaces for Biomolecule Immobilization. Langmuir. 25:12275-12282.

Holden M.T, Carter M.CD, Wu C.H, Wolfer J., Codner E., Sussman M.R, Lynn D.M, Smith L.M. 2015. Photolithographic Synthesis of High-Density DNA and RNA Arrays on Flexible, Transparent, and Easily Subdivided Plastic Substrates. Analytical Chemistry. 87:11420-11428.

Strother T., Knickerbocker T., Russell J.N, Butler J.E, Smith L.M, Hamers R.J. 2002. Photochemical functionalization of diamond films. Langmuir. 18:968-971.

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