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C

Cesnik A.J, Yang B., Truong A., Etheridge T., Spiniello M., Steinbrink M.I, Shortreed M.L, Frey B.L, Jarrard D.F, Smith L.M. 2018. Long noncoding RNAs AC009014. 3 and newly discovered XPLAID differentiate aggressive and indolent prostate cancers. Translational Oncology. 11(3):808-814.

Cesnik A.J, Miller R.M, Ibrahim K., Lu L., Millikin R.J, Shortreed M.R, Frey B.L, Smith L.M. 2021. Spritz: A Proteogenomic Database Engine. Journal of Proteome Research. 20:1826-1834.

Cartwright GS, Smith L.M, Heinzelmann EW, Ruebush MJ, J. Parce W, McConnell HM. 1982. H-2Kk and vesicular stomatitis virus G proteins are not extensively associated in reconstituted membranes recognized by T cells. Proceedings of the National Academy of Sciences of the United States of America. 79:1506-10.

Carr A.V, Frey B.L, Scalf M., Cesnik A.J, Rolfs Z., Pike K.A, Yang B., Keller M.P, Jarrard D.F, Shortreed M.R et al.. 2022. MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses. Journal of Proteome Research. 21:410-419.

Cai W., Lin Z., Strother T., Smith L.M, Hamers R.J. 2002. Chemical modification and patterning of iodine-terminated silicon surfaces using visible light. Journal of Physical Chemistry B. 106:2656-2664.

B

Buxton E.C, Westphall M., Jacobson W., Tong X.C, Smith L.M. 1996. Automation in large-scale DNA sequencing. Laboratory Robotics and Automation. 8:339-349.

Buxton K.E, Kennedy-Darling J., Shortreed M.R, Zaidan N.Z, Olivier M., Scalf M., Sridharan R., Smith L.M. 2017. Elucidating Protein-DNA Interactions in Human Alphoid Chromatin via Hybridization Capture and Mass Spectrometry. Journal of Proteome Research. 16:3433-3442.

Brumley R.L, Smith L.M. 1991. Rapid DNA sequencing by horizontal ultrathin gel electrophoresis. Nucleic Acids Research. 19:4121-4126.

Brow M.AD, Oldenburg M.C, Lyamichev V., Heisler L.M, Grotelueschen J., Lyamicheva N., Kozyavkin S., Fors L., Dahlberg J., Smith L.M et al.. 1996. Mutation detection by cleavase fragment length polymorphism. Focus. 18:2-5.

Brow M.AD, Oldenburg M.C, Lyamichev V., Heisler L.M, Grotelueschen J., Lyamicheva N., Kozyavkin S., Fors L., Dahlberg J.E, Smith L.M et al.. 1996. The Cleavase Fragment Length Polymorphism (CFLP) assay. Biochemica. 1:14-15.

Brow M.AD, Oldenburg M.C, Lyamichev V., Heisler L.M, Lyamicheva N., Hall J.G, Eagan N.J, Olive D.M, Smith L.M, Fors L. et al.. 1996. Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage. Journal of Clinical Microbiology. 34:3129-3137.

Broderick A.H, Lockett M.R, Buck M.E, Yuan Y., Smith L.M, Lynn D.M. 2012. In situ Synthesis of Oligonucleotide Arrays on Surfaces Coated with Crosslinked Polymer Multilayers. Chemistry of Materials. 24:938-945.

Broderick A.H, Carter M.CD, Lockett M.R, Smith L.M, Lynn D.M. 2013. Fabrication of Oligonucleotide and Protein Arrays on Rigid and Flexible Substrates Coated with Reactive Polymer Multilayers. ACS Applied Materials & Interfaces. 5:351-359.

Book A.J, Yang P.Z, Scalf M., Smith L.M, Vierstra R.D. 2005. Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis. Plant Physiology. 138:1046-1057.

Book AJ, Gladman NP, Lee S-S, Scalf M, Smith L.M, Vierstra RD. 2010. Affinity Purification of the Arabidopsis 26 S Proteasome Reveals a Diverse Array of Plant Proteolytic Complexes. Journal of Biological Chemistry. 285:25554-25569.

Berggren W.T, Takova T., Olson M.C, Eis P.S, Kwiatkowski R.W, Smith L.M. 2002. Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection. Analytical Chemistry. 74:1745-1750.

Berggren W.T, Westphall M.S, Smith L.M. 2002. Single-pulse nanoelectrospray ionization. Analytical Chemistry. 74:3443-3448.

Baker SE, Lasseter TL, Smith L.M, Hamers R.J. 2002. Covalently-linked adducts of single-walled nanotubes with biomolecules: Synthesis, hybridization, and biologically-directed surface assembly. Materials Research Society Symposium Proceedings. 737

A

Aguilar-Hernandez V., Kim D.Y, Stankey R.J, Scalf M., Smith L.M, Vierstra R.D. 2017. Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome during Photomorphogenesis. Molecular Plant. 10:846-865.

Aebersold R., Agar J.N, Amster I.J, Baker M.S, Bertozzi C.R, Boja E.S, Costello C.E, Cravatt B.F, Fenselau C., Garcia B.A et al.. 2018. How many human proteoforms are there? Nature Chemical Biology. 14:206-214.

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