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SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress. Plant Cell. 30:1077-1099.. 2018.
Ultrafast Peptide Label-Free Quantification with FlashLFQ. Journal of Proteome Research. 17:386-391.. 2018.
Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion. Journal of Proteome Research. 18:349-358.. 2019.
Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.. 2019.
An Algorithm to Improve the Speed of Semi and Non-specific Enzyme Searches in Proteomics. Current Bioinformatics. 15:1065-1074.. 2020.
A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics. Journal of Proteome Research. 19:1975-1981.. 2020.
Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data. Journal of Proteome Research. 19:3510-3517.. 2020.
O-Pair Search with MetaMorpheus for O-glycopeptide characterization. Nature Methods. 17:1133-+.. 2020.
Advanced Strategies for Proton-Transfer Reactions Coupled with Parallel Ion Parking on a 21 T FT-ICR MS for Intact Protein Analysis. Analytical Chemistry. 93:9119-9128.. 2021.
An atlas of protein turnover rates in mouse tissues. Nature Communications. 12. 2021.
Automated Assignment of Proteoform Classification Levels. Journal of Proteome Research. 20:4101-4105.. 2021.
Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus. Journal of Proteome Research. 20:1997-2004.. 2021.
Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data. Journal of Proteome Research. 20:317-325.. 2021.
Fused in sarcoma regulates DNA replication timing and kinetics. Journal of Biological Chemistry. 297. 2021.
Internal Fragment Ions Disambiguate and Increase Identifications in Top-Down Proteomics. Journal of Proteome Research. 20:5412-5418.. 2021.
ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics. Journal of Proteome Research. 20:1936-1942.. 2021.
Spritz: A Proteogenomic Database Engine. Journal of Proteome Research. 20:1826-1834.. 2021.
Discovery of Dehydroamino Acid Residues in the Capsid and Matrix Structural Proteins of HIV-1 br. Journal of Proteome Research. 21:993-1001.. 2022.
Enhanced protein isoform characterization through long-read proteogenomics. Genome Biology. 23. 2022.
A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis. Journal of Proteome Research. 21:2609-2618.. 2022.
MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses. Journal of Proteome Research. 21:410-419.. 2022.