Publications

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Journal Article
Peelen D., Kodoyianni V., Lee J., Zheng T., Shortreed M.R, Smith L.M.  2006.  Specific capture of mammalian cells by cell surface receptor binding to ligand immobilized on gold thin films. Journal of Proteome Research. 5:1580-1585.
Cesnik A.J, Miller R.M, Ibrahim K., Lu L., Millikin R.J, Shortreed M.R, Frey B.L, Smith L.M.  2021.  Spritz: A Proteogenomic Database Engine. Journal of Proteome Research. 20:1826-1834.
Chen X., Fei Z.D, Smith L.M, Bradbury E.M, Majidi V..  1999.  Stable-isotope-assisted MALDI-TOF mass spectrometry for accurate determination of nucleotide compositions of PCR products. Analytical Chemistry. 71:3118-3125.
Collins F.S, Benjamin L.J, Botstein D., Cox J.R, Davidson N., Gray J.W, Holtzman N., Housman D.E, Jamison K.R, Nelkin D. et al..  1994.  Statement on use of DNA testing for presymptomatic identification of cancer risk. JAMA. 271:785-785.
Lu M.C, Hall J.G, Shortreed M.R, Wang L.M, Berggren W.T, Stevens P.W, Kelso D.M, Lyamichev V., Neri B., Skinner J.L et al..  2002.  Structure-specific DNA cleavage on surfaces. Journal of the American Chemical Society. 124:7924-7931.
Qin H., Kim H.S, Blick R.H, Westphall M.S, Smith L.M.  2007.  Subthreshold field emission from thin silicon membranes. Applied Physics Letters. 91
Rytz T.C, Miller M.J, McLoughlin F., Augustine R.C, Marshall R.S, Juan Y.T, Charng Y.Y, Scalf M., Smith L.M, Vierstra R.D.  2018.  SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress. Plant Cell. 30:1077-1099.
Chen Y., Shortreed M.R, Peelen D., Lu M.C, Smith L.M.  2004.  Surface amplification of invasive cleavage products. Journal of the American Chemical Society. 126:3016-3017.
Lu M.C, Shortreed M.R, Hall J.G, Wang L.M, Berggren T., Stevens P.W, Kelso D.M, Lyamichev V., Neri B., Smith L.M.  2002.  A surface invasive cleavage assay for highly parallel SNP analysis. Human Mutation. 19:416-422.
Smith L.M, Corn R.M, Condon A.E, Lagally M.G, Frutos A.G, Liu Q.H, Thiel A.J.  1998.  A surface-based approach to DNA computation. Journal of Computational Biology. 5:255-267.
Wang L., Liu Q., Frutos A.G, Gillmor S.D, Thiel A.J, Strother T.C, Condon A.E, Corn R.M, Lagally M.G, Smith L.M.  1999.  Surface-based DNA computing operations: DESTROY and READOUT. Biosystems. 52:189-191.
Strother T., Cai W., Zhao X.S, Hamers R.J, Smith L.M.  2000.  Synthesis and characterization of DNA-modified silicon (111) surfaces. Journal of the American Chemical Society. 122:1205-1209.
Smith L.M, Kaiser RJ, Sanders JZ, Hood LE.  1987.  The synthesis and use of fluorescent oligonucleotides in DNA sequence analysis. Methods in Enzymology. 155:260-301.
Smith L.M, Fung S, Hunkapiller MW, Hunkapiller TJ, Hood LE.  1985.  The synthesis of oligonucleotides containing an aliphatic amino group at the 5' terminus: synthesis of fluorescent DNA primers for use in DNA sequence analysis. Nucleic Acids Research. 13:2399-412.
Saracco S.A, Hansson M., Scalf M., Walker J.M, Smith L.M, Vierstra R.D.  2009.  Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Plant Journal. 59:344-358.
Lockett MR, Phillips MF, Jarecki JL, Peelen D, Smith L.M.  2008.  A tetrafluorophenyl activated ester self-assembled monolayer for the immobilization of amine-modified oligonucleotides. Langmuir. 24:69-75.
Shortreed M.R, Chang S.B, Hong D.G, Phillips M., Campion B., Tulpan D.C, Andronescu M., Condon A., Hoos H.H, Smith L.M.  2005.  A thermodynamic approach to designing structure-free combinatorial DNA word sets. Nucleic Acids Research. 33:4965-4977.
Tulpan D., Andronescu M., Chang S.B, Shortreed M.R, Condon A., Hoos H.H, Smith L.M.  2005.  Thermodynamically based DNA strand design. Nucleic Acids Research. 33:4951-4964.
Gilliland G.D, Petrovic M.S, Hjalmarson H.P, Wolford D.J, Northrop G.A, Kuech T.F, Smith L.M, Bradley J.A.  1998.  Time-dependent heterointerfacial band bending and quasi-two-dimensionl excitonic transport in GaAs structures. Physical Review B. 58:4728-4732.
Smith L.M, Shortreed MR, Olivier M.  2011.  To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation. Analyst. 136:3060-3065.
Spiniello M., Scalf M., Casamassimi A., Abbondanza C., Smith L.M.  2022.  Towards an Ideal In Cell Hybridization-Based Strategy to Discover Protein Interactomes of Selected RNA Molecules. International Journal of Molecular Sciences. 23
Keller M.P, Paul P.K, Rabaglia M.E, Stapleton D.S, Schueler K.L, Broman A.T, Ye S.I, Leng N., Brandon C.J, Neto E.C et al..  2016.  The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets. PLoS Genet. 12(e1006466)
Book A.J, Yang P.Z, Scalf M., Smith L.M, Vierstra R.D.  2005.  Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis. Plant Physiology. 138:1046-1057.
Millikin R.J, Solntsev S.K, Shortreed M.R, Smith L.M.  2018.  Ultrafast Peptide Label-Free Quantification with FlashLFQ. Journal of Proteome Research. 17:386-391.
Kolner DE, Mead DA, Smith L.M.  1992.  Ultrathin DNA sequencing gels using microtrough vertical electrophoresis plates. BioTechniques. 13:338-9.

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