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Publications

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Smith L.M. 2010. Nanotechnology: Molecular robots on the move. Nature. 465:167-168.

Smith L.M, Shortreed MR, Olivier M. 2011. To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation. Analyst. 136:3060-3065.

Smith L.M, Kelleher N.L, Ge Y., Down PConsortium. 2013. Proteoform: a single term describing protein complexity. Nature Methods. 10:186-187.

Smith L.M, Kelleher N.L. 2018. Proteoforms as the next proteomics currency. Science. 359:1106-1107.

Smith L.M, Thomas P.M, Shortreed M.R, Schaffer L.V, Fellers R.T, LeDuc R.D, Tucholski T., Ge Y., Agar J.A, Anderson L.C et al.. 2019. A five-level classification system for proteoform identifications. Nature methods. 16(10)

Solntsev S.K, Shortreed M.R, Frey B.L, Smith L.M. 2018. Enhanced Global Post-translational Modification Discovery with MetaMorpheus. Journal of Proteome Research. 17:1844-1851.

Spiniello M., Knoener R.A, Steinbrink M.I, Yang B., Cesnik A.J, Buxton K.E, Scalf M., Jarrard D.F, Smith L.M. 2018. HyPR-MS for multiplexed discovery of MALAT1, NEAT1, and NORAD lncRNA protein interactomes. Journal of Proteome Research. 17(9):3022-3038.

Spiniello M., Steinbrink M.I, Cesnik A.J, Miller R.M, Scalf M., Shortreed M.R, Smith L.M. 2019. Comprehensive in vivo identification of the c-Myc mRNA interactome using HyPR-MS. Cold Spring Harbor Laboratory Press.

Spiniello M., Scalf M., Casamassimi A., Abbondanza C., Smith L.M. 2022. Towards an Ideal In Cell Hybridization-Based Strategy to Discover Protein Interactomes of Selected RNA Molecules. International Journal of Molecular Sciences. 23

Stevens P.W, Hall J.G, Lyamichev V., Neri B.P, Lu M.C, Wang L.M, Smith L.M, Kelso D.M. 2001. Analysis of single nucleotide polymorphisms with solid phase invasive cleavage reactions. Nucleic Acids Research. 29:art.no.-e77.

Strother T., Cai W., Zhao X.S, Hamers R.J, Smith L.M. 2000. Synthesis and characterization of DNA-modified silicon (111) surfaces. Journal of the American Chemical Society. 122:1205-1209.

Strother T., Hamers R.J, Smith L.M. 2000. Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces. Nucleic Acids Research. 28:3535-3541.

Strother T., Knickerbocker T., Russell J.N, Butler J.E, Smith L.M, Hamers R.J. 2002. Photochemical functionalization of diamond films. Langmuir. 18:968-971.

Sturm R., Sheynkman G., Booth C., Smith L.M, Pedersen J.A, Li L.J. 2012. Absolute Quantification of Prion Protein (90-231) Using Stable Isotope-Labeled Chymotryptic Peptide Standards in a LC-MRM AQUA Workflow. Journal of the American Society for Mass Spectrometry. 23:1522-1533.

Su X.P, Smith L.M. 2004. Demonstration of a universal surface DNA computer. Nucleic Acids Research. 32:3115-3123.

Sun B, Colavita PE, Kim H, Lockett M, Marcus MS, Smith L.M, Hamers R.J. 2006. Covalent Photochemical Functionalization of Amorphous Carbon Thin Films for Integrated Real-Time Biosensing. Langmuir. 22:9598-9605.

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Tang W, Krause J, Zhu L, Smith L.M. 1997. Factors influencing oligonucleotide stability in matrix-assisted laser desorption/ionization (MALDI) mass spectroscopy. International Journal of Mass Spectrometry and Ion Processes. 169/170:301-311.

Tang W, Nelson CM, Zhu L, Smith L.M. 1997. Positive ion formation in the ultraviolet matrix- assisted laser desorption/ionization analysis of oligonucleotides by using 2,5-dihydroxybenzoic acid. Journal of the American Society for Mass Spectrometry. 8:218-224.

Tang W, Zhu L, Smith L.M. 1997. Controlling DNA Fragmentation in MALDI-MS by Chemical Modification. Analytical Chemistry. 69:302-312.

Thiel A.J, Frutos A.G, Jordan C.E, Corn R.M, Smith L.M. 1997. In situ surface plasmon resonance imaging detection of DNA hybridization to oligonucleotide arrays on gold surfaces. Analytical Chemistry. 69:4948-4956.

Tong X.C, Smith L.M. 1992. Solid-phase method for the purification of DNA sequencing reactions. Analytical Chemistry. 64:2672-2677.

Tong X, Smith L.M. 1993. Solid phase purification in automated DNA sequencing. DNA Sequence. 4:151-62.

Torde R.G, Therrien A.J, Shortreed M.R, Smith L.M, Lamos S.M. 2013. Multiplexed Analysis of Cage and Cage Free Chicken Egg Fatty Acids Using Stable Isotope Labeling and Mass Spectrometry. Molecules. 18:14977-14988.

Tulpan D., Andronescu M., Chang S.B, Shortreed M.R, Condon A., Hoos H.H, Smith L.M. 2005. Thermodynamically based DNA strand design. Nucleic Acids Research. 33:4951-4964.

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Wang L., Liu Q., Frutos A.G, Gillmor S.D, Thiel A.J, Strother T.C, Condon A.E, Corn R.M, Lagally M.G, Smith L.M. 1999. Surface-based DNA computing operations: DESTROY and READOUT. Biosystems. 52:189-191.

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