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Miller R.M, Jordan B., Mehlferber M.M, Jeffery E.D, Chatzipantsiou C., Kaur S., Millikin R.J, Dai Y.X, Tiberi S., Castaldi P.J et al.. 2022. Enhanced protein isoform characterization through long-read proteogenomics. Genome Biology. 23

Murray JK, Sadowsky JD, Scalf M, Smith L.M, Tomita Y, Gellman S.H. 2008. Exploration of structure - Activity relationships among foldamer ligands for a specific protein binding site via parallel and split-and-mix library synthesis. Journal of Combinatorial Chemistry. 10:204-215.

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Denton D.D, Thiel A.J, Smith L.M, Bajikar S., White V., Ghodssi R., Fish G., McCaughan L.. 1994. Fabrication of microstructures for use in biological and optical applications. Proceedings - Electrochemical Society. 94-14:103-14.

Jagtap P.D, Johnson J.E, Onsongo G., Sadler F.W, Murray K., Wang Y.B, Shenykrnan G.M, Bandhakavi S., Smith L.M, Griffin T.J. 2014. Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework. Journal of Proteome Research. 13:5898-5908.

Jia W.Y, Kim S.H, Scalf M.A, Tonzi P., Millikin R.J, Guns W.M, Liu L., Mastrocola A.S, Smith L.M, Huang T.T et al.. 2021. Fused in sarcoma regulates DNA replication timing and kinetics. Journal of Biological Chemistry. 297

Jia W.Y, Kim S.H, Scalf M.A, Tonzi P., Millikin R.J, Guns W.M, Liu L., Mastrocola A.S, Smith L.M, Huang T.T et al.. 2021. Fused in sarcoma regulates DNA replication timing and kinetics. Journal of Biological Chemistry. 297

H

Cartwright GS, Smith L.M, Heinzelmann EW, Ruebush MJ, J. Parce W, McConnell HM. 1982. H-2Kk and vesicular stomatitis virus G proteins are not extensively associated in reconstituted membranes recognized by T cells. Proceedings of the National Academy of Sciences of the United States of America. 79:1506-10.

Mayer K.S, Chen X., Sanders D., Chen J., Jiang J., N P., Scalf M., Smith L.M, Zhong X.. 2019. HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development. Plant Physiology. 180(1):342-355.

Kostichka AJ, Marchbanks ML, Brumley, Jr. RL, Drossman H, Smith L.M. 1992. High speed automated DNA sequencing in ultrathin slab gels. Bio/Technology. 10:78-81.

Luckey J.A, Drossman H., Kostichka A.J, Mead D.A, Dcunha J., Norris T.B, Smith L.M. 1990. High speed DNA sequencing by capillary electrophoresis. Nucleic Acids Research. 18:4417-4421.

Smith L.M, Brumley, Jr. RL, Buxton EC, Giddings M, Marchbanks M, Tong X. 1996. High-speed automated DNA sequencing in ultrathin slab gels. Methods in Enzymology. 271:219-237.

Aebersold R., Agar J.N, Amster I.J, Baker M.S, Bertozzi C.R, Boja E.S, Costello C.E, Cravatt B.F, Fenselau C., Garcia B.A et al.. 2018. How many human proteoforms are there? Nature Chemical Biology. 14:206-214.

Aebersold R., Agar J.N, Amster I.J, Baker M.S, Bertozzi C.R, Boja E.S, Costello C.E, Cravatt B.F, Fenselau C., Garcia B.A et al.. 2018. How many human proteoforms are there? Nature Chemical Biology. 14:206-214.

Aebersold R., Agar J.N, Amster I.J, Baker M.S, Bertozzi C.R, Boja E.S, Costello C.E, Cravatt B.F, Fenselau C., Garcia B.A et al.. 2018. How many human proteoforms are there? Nature Chemical Biology. 14:206-214.

Aebersold R., Agar J.N, Amster I.J, Baker M.S, Bertozzi C.R, Boja E.S, Costello C.E, Cravatt B.F, Fenselau C., Garcia B.A et al.. 2018. How many human proteoforms are there? Nature Chemical Biology. 14:206-214.

Aebersold R., Agar J.N, Amster I.J, Baker M.S, Bertozzi C.R, Boja E.S, Costello C.E, Cravatt B.F, Fenselau C., Garcia B.A et al.. 2018. How many human proteoforms are there? Nature Chemical Biology. 14:206-214.

Dai Y.L, Millikin R.J, Rolfs Z., Shortreed M.R, Smith L.M. 2022. A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis. Journal of Proteome Research. 21:2609-2618.

Guillen-Ahlers H., Rao P.K, Levenstein M.E, Kennedy-Darling J., Perumalla D.S, Jadhav A.Y, Glenn J.P, Ludwig-Kubinski A., Drigalenko E., Montoya M.J et al.. 2016. HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae. Genomics. 107:267-273.

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Schaffer L.V, Millikin R.J, Miller R.M, Anderson L.C, Fellers R.T, Ge Y., Kelleher N.L, LeDuc R.D, Liu X., Payne S.H et al.. 2019. Identification and Quantification of Proteoforms by Mass Spectrometry. Proteomics.

Schaffer L.V, Millikin R.J, Miller R.M, Anderson L.C, Fellers R.T, Ge Y., Kelleher N.L, LeDuc R.D, Liu X., Payne S.H et al.. 2019. Identification and Quantification of Proteoforms by Mass Spectrometry. Proteomics.

Lee J.E, Mirza S.P, Didier D.N, Scalf M., Olivier M., Greene A.S, Smith L.M. 2008. Identification of Cell Surface Markers to Differentiate Rat Endothelial and Fibroblast Cells Using Lectin Arrays and LC-ESI-MS/MS. Analytical Chemistry. 80:8269-8275.

Lu L, Millikin RJ, Solntsev SK, Rolfs Z, Scalf M, Shortreed MR, Smith LM. 2018. Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus. Journal of Proteome Research. 17(7):2370-2376.

Miller R.M, Millikin R.J, Hoffman C.V, Solntsev S.K, Sheynkman G.M, Shortreed M.R, Smith L.M. 2019. Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data. Journal of Proteome Research. 18(9)

Miller R.M, Millikin R.J, Hoffman C.V, Solntsev S.K, Sheynkman G.M, Shortreed M.R, Smith L.M. 2019. Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data. Journal of Proteome Research. 18(9)

Schaffer L.V, Millikin R.J, Shortreed M.R, Scalf M., Smith L.M. 2020. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data. Journal of Proteome Research. 19:3510-3517.

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