Publications

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Smith L.M, Brumley, Jr. RL, Buxton EC, Giddings M, Marchbanks M, Tong X.  1996.  High-speed automated DNA sequencing in ultrathin slab gels. Methods in Enzymology. 271:219-237.
Smith L.M, Fung S, Hunkapiller MW, Hunkapiller TJ, Hood LE.  1985.  The synthesis of oligonucleotides containing an aliphatic amino group at the 5' terminus: synthesis of fluorescent DNA primers for use in DNA sequence analysis. Nucleic Acids Research. 13:2399-412.
Smith L.M.  1991.  High-speed DNA sequencing by capillary gel electrophoresis. Nature. 349:812-813.
Smith L.M, Rubenstein JLR, J. Parce W, McConnell HM.  1980.  Lateral diffusion of M-13 coat protein in mixtures of phosphatidylcholine and cholesterol. Biochemistry. 19:5907-11.
Smith L.M.  2008.  Is charge reduction in ESI really necessary? Journal of the American Society for Mass Spectrometry. 19:629-631.
Smith L.M.  1988.  Fluorescence-based automated DNA sequence analysis. Genet. Eng. (N. Y.). 10:91-108.
Smith L.M.  1996.  Sequence from spectrometry: a realistic prospect? Nature Biotechnology. 14:1084,1087.
Smith L.M, Petty H.R, Parham P., McConnell H.M.  1982.  Cell surface properties of HLA antigens on Epstein-Barr virus-transformed cell lines. Proceedings of the National Academy of Sciences of the United States of America-Biological Sciences. 79:608-612.
Smith L.M, Smith BA, McConnell HM.  1979.  Lateral diffusion of M-13 coat protein in model membranes. Biochemistry. 18:2256-9.
Smith L.M, Kaiser RJ, Sanders JZ, Hood LE.  1987.  The synthesis and use of fluorescent oligonucleotides in DNA sequence analysis. Methods in Enzymology. 155:260-301.
Smith L.M.  1993.  The Future of DNA-Sequencing. Science. 262:530-532.
Smith L.M, Weis RM, McConnell HM.  1981.  Measurement of rotational motion in membranes using fluorescence recovery after photobleaching. Biophysical Journal. 36:73-91.
Smith L.M, Shortreed MR, Olivier M.  2011.  To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation. Analyst. 136:3060-3065.
Shortreed M.R, Lamos S.M, Frey B.L, Phillips M.F, Patel M., Belshaw P.J, Smith L.M.  2006.  Ionizable isotopic labeling reagent for relative quantification of amine metabolites by mass spectrometry. Analytical Chemistry. 78:6398-6403.
Shortreed M.R, Chang S.B, Hong D.G, Phillips M., Campion B., Tulpan D.C, Andronescu M., Condon A., Hoos H.H, Smith L.M.  2005.  A thermodynamic approach to designing structure-free combinatorial DNA word sets. Nucleic Acids Research. 33:4965-4977.
Shortreed M.R, Frey B.L, Scalf M., Knoener R.A, Cesnik A.J, Smith L.M.  2016.  Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements. Journal of Proteome Research. 15:1213-1221.
Shortreed M.R, Wenger C.D, Frey B.L, Sheynkman G.M, Scalf M., Keller M.P, Attie A.D, Smith L.M.  2015.  Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. Journal of Proteome Research. 14:4714-4720.
Sheynkman GM, Shortreed MR, Frey BL, Scalf M, Smith L.M.  2014.  Large-Scale Mass Spectrometric Detection of Variant Peptides Resulting from Nonsynonymous Nucleotide Differences. Journal of Proteome Research. 13:228-240.
Sheynkman G.M, Shortreed M.R, Cesnik A.J, Smith L.M.  2016.  Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.
Sheynkman G.M, Shortreed M.R, Frey B.L, Smith L.M.  2013.  Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq. Molecular & Cellular Proteomics. 12:2341-2353.
Schaffer L.V, Millikin R.J, Miller R.M, Anderson L.C, Fellers R.T, Ge Y., Kelleher N.L, LeDuc R.D, Liu X., Payne S.H et al..  2019.  Identification and Quantification of Proteoforms by Mass Spectrometry. Proteomics.
Schaffer L.V, Rensvold J.W, Shortreed M.R, Cesnik A.J, Jochem A., Scalf M., Frey B.L, Pagliarini D.J, Smith L.M.  2018.  Identification and quantification of murine mitochondrial proteoforms using an integrated top-down and intact-mass strategy. Journal of Proteome Research. 17(10):3526-3536.
Schaffer L.V, Shortreed M.R, Cesnik A.J, Frey B.L, Solntsev S.K, Scalf M., Smith L.M.  2018.  Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families. Analytical Chemistry. 90:1325-1333.
Scalf M., Westphall M.S, Krause J., Kaufman S.L, Smith L.M.  1999.  Controlling charge states of large ions. Science. 283:194-197.
Scalf M., Westphall M.S, Smith L.M.  2000.  Charge reduction electrospray mass spectrometry. Analytical Chemistry. 72:52-60.

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