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A

Aguilar-Hernandez V., Kim D.Y, Stankey R.J, Scalf M., Smith L.M, Vierstra R.D. 2017. Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome during Photomorphogenesis. Molecular Plant. 10:846-865.

B

Berggren W.T, Takova T., Olson M.C, Eis P.S, Kwiatkowski R.W, Smith L.M. 2002. Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection. Analytical Chemistry. 74:1745-1750.

Brow M.AD, Oldenburg M.C, Lyamichev V., Heisler L.M, Grotelueschen J., Lyamicheva N., Kozyavkin S., Fors L., Dahlberg J., Smith L.M et al.. 1996. Mutation detection by cleavase fragment length polymorphism. Focus. 18:2-5.

C

Carr A.V, Frey B.L, Scalf M., Cesnik A.J, Rolfs Z., Pike K.A, Yang B., Keller M.P, Jarrard D.F, Shortreed M.R et al.. 2022. MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses. Journal of Proteome Research. 21:410-419.

Chen D.H, Johnson A.F, Severin J.M, Rank D.R, Smith L.M, Guilfoyle R.A. 1996. M13-102: A vector for facilitating construction and improving quality of M13 shotgun libraries. Gene. 172:53-57.

Chen X.Y, Westphall M.S, Smith L.M. 2003. Mass spectrometric analysis of DNA mixtures: Instrumental effects responsible for decreased sensitivity with increasing mass. Analytical Chemistry. 75:5944-5952.

D

Dai Y, Kennedy-Darling J, Shortreed MR, Scalf M, Gasch AP, Smith L.M. 2017. Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins. Analytical Chemistry. 89:7841-7846.

F

Fei Z.D, Ono T., Smith L.M. 1998. MALDI-TOF mass spectrometric typing of single nucleotide polymorphisms with mass-tagged ddNTPs. Nucleic Acids Research. 26:2827-2828.

Fitzgerald MC, Smith L.M. 1995. Mass spectrometry of nucleic acids: the promise of matrix-assisted laser desorption-ionization (MALDI) mass spectrometry. Annual Review of Biophysics & Biomolecular Structure. 24:117-40.

G

Gemperline D.C, Scalf M., Smith L.M, Vierstra R.D. 2016. Morpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine. Proteomics. 16:920-924.

Griffin TJ, Tang W, Smith L.M. 1999. MALDI-TOF mass spectrometric detection of PNA hybrids for genetic analysis. :143-154.

H

Hansen S.R, White D.S, Scalf M., Correa I.R, Smith L.M, Hoskins A.A, Staley J.P. 2022. Multi-step recognition of potential 5' splice sites by the Saccharomyces cerevisiae U1 snRNP. eLife. 11

K

Kennedy-Darling J, Smith L.M. 2014. Measuring the Formaldehyde Protein-DNA Cross-Link Reversal Rate. Analytical Chemistry. 86:5678-5681.

Kennedy-Darling J., Holden M.T, Shortreed M.R, Smith L.M. 2014. Multiplexed Programmable Release of Captured DNA. Chembiochem. 15:2353-2356.

Kim S.H, Stiles S.G, Feichtmeier J.M, Ramesh N., Zhan L.H, Scalf M.A, Smith L.M, Pandey U.B, Tibbetts R.S. 2018. Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS. Human Molecular Genetics. 27:322-337.

Krusemark C.J, Frey B.L, Belshaw P.J, Smith L.M. 2009. Modifying the Charge State Distribution of Proteins in Electrospray Ionization Mass Spectrometry by Chemical Derivatization. Journal of the American Society for Mass Spectrometry. 20:1617-1625.

L

Ladror D.T, Frey B.L, Scalf M., Levenstein M.E, Artymiuk J.M, Smith L.M. 2014. Methylation of yeast ribosomal protein S2 is elevated during stationary phase growth conditions. Biochemical and Biophysical Research Communications. 445:535-541.

Lamos S.M, Krusemark C.J, McGee C.J, Scalf M., Smith L.M, Belshaw P.J. 2006. Mixed isotope photoaffinity reagents for identification of small-molecule targets by mass spectrometry. Angewandte Chemie-International Edition. 45:4329-4333.

Lockett M.R, Shortreed M.R, Smith L.M. 2007. Molecular beacon-style hybridization assay for quantitative analysis of surface invasive cleavage reactions. Analytical Chemistry. 79:6031-6036.

Lu L., Scalf M., Shortreed M.R, Smith L.M. 2021. Mesh Fragmentation Improves Dissociation Efficiency in Top-down Proteomics. 32:1319-1325.

Luckey JA, Smith L.M. 1993. A model for the mobility of single-stranded DNA in capillary gel electrophoresis. Electrophoresis. 14:492-501.

P

Park J, Qin H, Scalf M, Hilger RT, Westphall MS, Smith L.M, Blick RH. 2011. A Mechanical Nanomembrane Detector for Time-of-Flight Mass Spectrometry. Nano Letters. 11:3681-3684.

Parr G.R, Fitzgerald M.C, Smith L.M. 1992. Matrix-assisted laser desorption/ionization mass spectrometry of synthetic oligodeoxyribonucleotides. Rapid Communications in Mass Spectrometry. 6:369-372.

S

Smith L.M, Weis RM, McConnell HM. 1981. Measurement of rotational motion in membranes using fluorescence recovery after photobleaching. Biophysical Journal. 36:73-91.

Smith L.M, Hood L. 1987. Mapping and sequencing the human genome: how to proceed. Bio/Technology. 5:933-9.

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