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Filters: Author is Shortreed, M. R. [Clear All Filters]
Ultrafast Peptide Label-Free Quantification with FlashLFQ. Journal of Proteome Research. 17:386-391.. 2018.
Thermodynamically based DNA strand design. Nucleic Acids Research. 33:4951-4964.. 2005.
A thermodynamic approach to designing structure-free combinatorial DNA word sets. Nucleic Acids Research. 33:4965-4977.. 2005.
A surface invasive cleavage assay for highly parallel SNP analysis. Human Mutation. 19:416-422.. 2002.
Surface amplification of invasive cleavage products. Journal of the American Chemical Society. 126:3016-3017.. 2004.
Structure-specific DNA cleavage on surfaces. Journal of the American Chemical Society. 124:7924-7931.. 2002.
Spritz: A Proteogenomic Database Engine. Journal of Proteome Research. 20:1826-1834.. 2021.
Specific capture of mammalian cells by cell surface receptor binding to ligand immobilized on gold thin films. Journal of Proteome Research. 5:1580-1585.. 2006.
Sequence-Specific Capture of Protein-DNA Complexes for Mass Spectrometric Protein Identification. Plos One. 6. 2011.
Scoring single-nucleotide polymorphisms at the single-molecule level by counting individual DNA cleavage events on surfaces. Analytical Chemistry. 77:6594-6600.. 2005.
Quantitative detection of individual cleaved DNA molecules on surfaces using gold nanoparticles and scanning electron microscope imaging. Analytical Chemistry. 78:1528-1534.. 2006.
Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys. Bmc Genomics. 18. 2017.
Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.. 2016.
Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. 17:568-578.. 2018.
ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 17:1321-1325.. 2018.
Parallel single nucleotide polymorphism genotyping by surface invasive cleavage with universal detection. Analytical Chemistry. 77:2400-2405.. 2005.
O-Pair Search with MetaMorpheus for O-glycopeptide characterization. Nature Methods. 17:1133-+.. 2020.
Multiplexed Programmable Release of Captured DNA. Chembiochem. 15:2353-2356.. 2014.
Multiplexed Analysis of Cage and Cage Free Chicken Egg Fatty Acids Using Stable Isotope Labeling and Mass Spectrometry. Molecules. 18:14977-14988.. 2013.
Molecular beacon-style hybridization assay for quantitative analysis of surface invasive cleavage reactions. Analytical Chemistry. 79:6031-6036.. 2007.
Ionizable isotopic labeling reagent for relative quantification of amine metabolites by mass spectrometry. Analytical Chemistry. 78:6398-6403.. 2006.
Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data. Journal of Proteome Research. 19:3510-3517.. 2020.