Publications
Advanced Strategies for Proton-Transfer Reactions Coupled with Parallel Ion Parking on a 21 T FT-ICR MS for Intact Protein Analysis. Analytical Chemistry. 93:9119-9128.
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2021. An atlas of protein turnover rates in mouse tissues. Nature Communications. 12
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2021. Automated Assignment of Proteoform Classification Levels. Journal of Proteome Research. 20:4101-4105.
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2021. Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus. Journal of Proteome Research. 20:1997-2004.
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2021. Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data. Journal of Proteome Research. 20:317-325.
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2021. Fused in sarcoma regulates DNA replication timing and kinetics. Journal of Biological Chemistry. 297
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2021. ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics. Journal of Proteome Research. 20:1936-1942.
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2021. Spritz: A Proteogenomic Database Engine. Journal of Proteome Research. 20:1826-1834.
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2021. An Algorithm to Improve the Speed of Semi and Non-specific Enzyme Searches in Proteomics. Current Bioinformatics. 15:1065-1074.
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2020. A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics. Journal of Proteome Research. 19:1975-1981.
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2020. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data. Journal of Proteome Research. 19:3510-3517.
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2020. O-Pair Search with MetaMorpheus for O-glycopeptide characterization. Nature Methods. 17:1133-+.
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2020. Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion. Journal of Proteome Research. 18:349-358.
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2019. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis. Journal of Biological Chemistry. 294:17570-17592.
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2019. Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing. Plant Cell. 30:134-152.
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2018. Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance. Stem Cell Reports. 10:627-641.
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2018. Enhanced Global Post-translational Modification Discovery with MetaMorpheus. Journal of Proteome Research. 17:1844-1851.
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2018. Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families. Analytical Chemistry. 90:1325-1333.
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2018. How many human proteoforms are there? Nature Chemical Biology. 14:206-214.
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2018. Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers. Transl Oncol. 11:808-814.
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2018. Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS. Human Molecular Genetics. 27:322-337.
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2018. ProForma: A Standard Proteoform Notation. Journal of Proteome Research. 17:1321-1325.
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