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Lu L., Scalf M., Shortreed M.R, Smith L.M. 2021. Mesh Fragmentation Improves Dissociation Efficiency in Top-down Proteomics. 32:1319-1325.

Lu L., Riley N.M, Shortreed M.R, Bertozzi C.R, Smith L.M. 2020. O-Pair Search with MetaMorpheus for O-glycopeptide characterization. Nature Methods. 17:1133-+.

Luckey J.A, Drossman H., Kostichka A.J, Mead D.A, Dcunha J., Norris T.B, Smith L.M. 1990. High speed DNA sequencing by capillary electrophoresis. Nucleic Acids Research. 18:4417-4421.

Luckey JA, Smith L.M. 1991. Automated methods in DNA sequence analysis. Laboratory Robotics and Automation. 3:175-80.

Luckey JA, Drossman H, Kostichka T, Smith L.M. 1993. High-speed DNA sequencing by capillary gel electrophoresis. Methods in Enzymology. 218:154-72.

Luckey J.A, Norris T.B, Smith L.M. 1993. Analysis of resolution in DNA sequencing by capillary gel electrophoresis. Journal of Physical Chemistry. 97:3067-3075.

Luckey J.A, Smith L.M. 1993. Optimization of electric field strength for DNA sequencing in capillary gel electrophoresis. Analytical Chemistry. 65:2841-2850.

Luckey JA, Smith L.M. 1993. A model for the mobility of single-stranded DNA in capillary gel electrophoresis. Electrophoresis. 14:492-501.

Luckey JA, Smith L.M. 1993. Optimization of electric field strength for DNA sequencing in capillary gel electrophoresis. Proceedings of SPIE - The International Society for Optical Engineering. 1891:21-6.

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Mandir JB, Lockett MR, Phillips MF, Allawi HT, Lyamichev VI, Smith L.M. 2009. Rapid Determination of RNA Accessible Sites by Surface Plasmon Resonance Detection of Hybridization to DNA Arrays. Analytical Chemistry. 81:8949-8956.

Mayer K.S, Chen X., Sanders D., Chen J., Jiang J., N P., Scalf M., Smith L.M, Zhong X.. 2019. HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development. Plant Physiology. 180(1):342-355.

Mead DA, McClary J.A, Luckey J.A, Kostichka A.J, Witney F.R, Smith L.M. 1991. Bst DNA polymerase permits rapid sequence analysis from nanogram amounts of template. BioTechniques. 11:76-8,80,82-4,86-7.

Mead D.A, Pey N.K, Herrnstadt C., Marcil R.A, Smith L.M. 1991. A universal method for the direct cloning of PCR amplified nucleic acid. Bio/Technology. 9:657-663.

Mehdi S.Q, Recktenwald D.J, Smith L.M, Li G.C, Armour E.P, Hahn G.M. 1984. Effect of hyperthermia on murine cell surface histocompatibility antigens. Cancer Research. 44:3394-3397.

J. Mellors S, Jorabchi K, Smith L.M, J. Ramsey M. 2010. Integrated Microfluidic Device for Automated Single Cell Analysis Using Electrophoretic Separation and Electrospray Ionization Mass Spectrometry. Analytical Chemistry. 82:967-973.

Milikin RJ, Shortreed MR, Scalf M, Smith LM. 2023. Fast, Free, and Flexible Peptide and Protein Quantification with FlashLFQ. Methods Mol Biol.. 2426:303-313.

Miller M.J, Scalf M., Rytz T.C, Hubler S.L, Smith L.M, Vierstra R.D. 2013. Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation in Arabidopsis. Molecular & Cellular Proteomics. 12:449-463.

Miller R.M, Millikin R.J, Hoffman C.V, Solntsev S.K, Sheynkman G.M, Shortreed M.R, Smith L.M. 2019. Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data. Journal of Proteome Research. 18(9)

Miller R.M, Ibrahim K., Smith L.M. 2021. ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics. Journal of Proteome Research. 20:1936-1942.

Miller R.M, Knoener R.A, Benner B.E, Frey B.L, Scalf M., Shortreed M.R, Sherer N.M, Smith L.M. 2022. Discovery of Dehydroamino Acid Residues in the Capsid and Matrix Structural Proteins of HIV-1 br. Journal of Proteome Research. 21:993-1001.

Miller R.M, Jordan B., Mehlferber M.M, Jeffery E.D, Chatzipantsiou C., Kaur S., Millikin R.J, Dai Y.X, Tiberi S., Castaldi P.J et al.. 2022. Enhanced protein isoform characterization through long-read proteogenomics. Genome Biology. 23

Miller R.M, Smith L.M. 2022. Overview and considerations in bottom-up proteomics. Analyst.

Miller RM, Millikin RJ, Rolfs Z, Shortreed MR, Smith LM. 2023. Enhanced Proteomic Data Analysis with MetaMorpheus. Methods Mol Biol.. 2426:35-66.

Millikin R.J, Solntsev S.K, Shortreed M.R, Smith L.M. 2018. Ultrafast Peptide Label-Free Quantification with FlashLFQ. Journal of Proteome Research. 17:386-391.

Millikin R.J, Shortreed M.R, Scalf M., Smith L.M. 2020. A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics. Journal of Proteome Research. 19:1975-1981.

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