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D

Guo Z, Guilfoyle RA, Thiel AJ, Wang R, Smith L.M. 1994. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Research. 22:5456-65.

Griffin TJ, Hall JG, Prudent JR, Smith L.M. 1999. Direct genetic analysis by matrix-assisted laser desorption/ionization mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 96:6301-6306.

Guilfoyle RA, Smith L.M. 1994. A direct selection strategy for shotgun cloning and sequencing in the bacteriophage M13. Nucleic Acids Research. 22:100-7.

Sheynkman G.M, Shortreed M.R, Frey B.L, Smith L.M. 2013. Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq. Molecular & Cellular Proteomics. 12:2341-2353.

Kennedy-Darling J., Guillen-Ahlers H., Shortreed M.R, Scalf M., Frey B.L, Kendziorski C., Olivier M., Gasch A.P, Smith L.M. 2014. Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae. Journal of Proteome Research. 13:3810-3825.

Miller R.M, Knoener R.A, Benner B.E, Frey B.L, Scalf M., Shortreed M.R, Sherer N.M, Smith L.M. 2022. Discovery of Dehydroamino Acid Residues in the Capsid and Matrix Structural Proteins of HIV-1 br. Journal of Proteome Research. 21:993-1001.

Jarecki JL, Frey BL, Smith L.M, Stretton AO. 2011. Discovery of Neuropeptides in the Nematode Ascaris suum by Database Mining and Tandem Mass Spectrometry. Journal of Proteome Research. 10:3098-3106.

Mouradian S., Skogen J.W, Dorman F.D, Zarrin F., Kaufman S.L, Smith L.M. 1997. DNA analysis using an electrospray scanning mobility particle sizer. Analytical Chemistry. 69:919-925.

Lin Z., Strother T., Cai W., Cao X.P, Smith L.M, Hamers R.J. 2002. DNA attachment and hybridization at the silicon (100) surface. Langmuir. 18:788-796.

Liu Q., Wang L., Frutos A.G, Condon A.E, Corn R.M, Smith L.M. 2000. DNA computing on surfaces. Nature. 403:175-9.

Liu Q.H, Frutos A.G, Thiel A.J, Corn R.M, Smith L.M. 1998. DNA computing on surfaces: Encoding information at the single base level. Journal of Computational Biology. 5:269-278.

Wang L.M, Hall J.G, Lu M.C, Liu Q.H, Smith L.M. 2001. A DNA computing readout operation based on structure-specific cleavage. Nature Biotechnology. 19:1053-1059.

Smith L.M. 1993. DNA electrophoresis. Current Opinion in Biotechnology. 4:37-40.

Smith L.M. 1989. DNA sequence analysis: past, present, and future. American Biotechnology Laboratory. 7:10,12,14,16-18,20-5.

Hou W.Y, Smith L.M. 1994. DNA sequencing with a hexamer string primer and dye-labeled terminators. Analytical Biochemistry. 221:136-141.

Knickerbocker T., Strother T., Schwartz M.P, Russell J.N, Butler J., Smith L.M, Hamers R.J. 2003. DNA-modified diamond surfaces. Langmuir. 19:1938-1942.

Yang W.S, Auciello O., Butler J.E, Cai W., Carlisle J.A, Gerbi J., Gruen D.M, Knickerbocker T., Lasseter T.L, Russell J.N et al.. 2002. DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates. Nature Materials. 1:253-257.

E

Yang Z., Qian S., Scheid R.N, Lu L., Chen X., Liu R., Du X., Lv X., Boersma M.D, Scalf M. et al.. 2018. EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis. Nature genetics. 50(9)

Mehdi S.Q, Recktenwald D.J, Smith L.M, Li G.C, Armour E.P, Hahn G.M. 1984. Effect of hyperthermia on murine cell surface histocompatibility antigens. Cancer Research. 44:3394-3397.

Murray J.K, Farooqi B., Sadowsky J.D, Scalf M., Freund W.A, Smith L.M, Chen J.D, Gellman S.H. 2005. Efficient synthesis of a beta-peptide combinatorial library with microwave irradiation. Journal of the American Chemical Society. 127:13271-13280.

Dai Y.X, Shortreed M.R, Scalf M., Frey B.L, Cesnik A.J, Solntsev S., Schaffer L.V, Smith L.M. 2017. Elucidating Escherichia coil Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database. Journal of Proteome Research. 16:4156-4165.

Buxton K.E, Kennedy-Darling J., Shortreed M.R, Zaidan N.Z, Olivier M., Scalf M., Sridharan R., Smith L.M. 2017. Elucidating Protein-DNA Interactions in Human Alphoid Chromatin via Hybridization Capture and Mass Spectrometry. Journal of Proteome Research. 16:3433-3442.

Shortreed M.R, Frey B.L, Scalf M., Knoener R.A, Cesnik A.J, Smith L.M. 2016. Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements. Journal of Proteome Research. 15:1213-1221.

Knoener R.A, Becker J.T, Scalf M., Sherer N.M, Smith L.M. 2017. Elucidating the in vivo interactome of HIV-1 RNA by hybridization capture and mass spectrometry. Scientific Reports. 7

Holden M.T, Smith L.M. 2019. Encrypted Oligonucleotide Arrays for Molecular Authentication. ACS Combinatorial Science.

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