Publications

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Journal Article
Stevens P.W, Hall J.G, Lyamichev V., Neri B.P, Lu M.C, Wang L.M, Smith L.M, Kelso D.M.  2001.  Analysis of single nucleotide polymorphisms with solid phase invasive cleavage reactions. Nucleic Acids Research. 29:art.no.-e77.
Fei Z.D, Smith L.M.  2000.  Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry. 14:950-959.
Luckey J.A, Norris T.B, Smith L.M.  1993.  Analysis of resolution in DNA sequencing by capillary gel electrophoresis. Journal of Physical Chemistry. 97:3067-3075.
Fitzgerald M.C, Zhu L., Smith L.M.  1993.  The analysis of mock DNA sequencing reactions using matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry. 7:895-897.
Chen S.Y, Zheng T., Shortreed M.R, Alexander C., Smith L.M.  2007.  Analysis of cell surface carbohydrate expression patterns in normal and tumorigenic human breast cell lines using lectin arrays. Analytical Chemistry. 79:5698-5702.
Rabaglia M.E, Gray-Keller M.P, Frey B.L, Shortreed M.R, Smith L.M, Attie A.D.  2005.  alpha-Ketoisocaproate-induced hypersecretion of insulin by islets from diabetes-susceptible mice. American Journal of Physiology - Endocrinology & Metabolism. 289:E218-E224.
Kulevich SE, Frey BL, Kreitinger G, Smith L.M.  2010.  Alkylating Tryptic Peptides to Enhance Electrospray Ionization Mass Spectrometry Analysis. Analytical Chemistry. 82:10135-10142.
Rolfs Z., Millikin R.J, Smith L.M.  2020.  An Algorithm to Improve the Speed of Semi and Non-specific Enzyme Searches in Proteomics. Current Bioinformatics. 15:1065-1074.
Lockett MR, Shortreed MR, Smith L.M.  2008.  Aldehyde-terminated amorphous carbon substrates for the fabrication of biomolecule arrays. Langmuir. 24:9198-9203.
Book AJ, Gladman NP, Lee S-S, Scalf M, Smith L.M, Vierstra RD.  2010.  Affinity Purification of the Arabidopsis 26 S Proteasome Reveals a Diverse Array of Plant Proteolytic Complexes. Journal of Biological Chemistry. 285:25554-25569.
Weisbrod C.R, Anderson L.C, Hendrickson C.L, Schaffer L.V, Shortreed M.R, Smith L.M, Shabanowitz J., Hunt D.F.  2021.  Advanced Strategies for Proton-Transfer Reactions Coupled with Parallel Ion Parking on a 21 T FT-ICR MS for Intact Protein Analysis. Analytical Chemistry. 93:9119-9128.
Kim D.Y, Scalf M., Smith L.M, Vierstra R.D.  2013.  Advanced Proteomic Analyses Yield a Deep Catalog of Ubiquitylation Targets in Arabidopsis. Plant Cell. 25:1523-1540.
Guillen-Ahlers H., Shortreed M.R, Smith L.M, Olivier M..  2014.  Advanced methods for the analysis of chromatin-associated proteins. Physiological Genomics. 46:441-447.
Giddings MC, Brumley, Jr. RL, Haker M, Smith L.M.  1993.  An adaptive, object oriented strategy for base calling in DNA sequence analysis. Nucleic Acids Research. 21:4530-40.
Guillen-Ahlers H, Rao P.K, Perumalla D.S, Montoya M.J, Jadhav A.YL, Shortreed M.R, Smith L.M, Olivier M.  2018.  Adaptation of Hybridization Capture of Chromatin-associated Proteins for Proteomics to Mammalian Cells. Journal of Visualized Experiments. (136)
Lockett M.R, Carlisle J.C, Le D.V, Smith L.M.  2009.  Acyl Chloride-Modified Amorphous Carbon Substrates for the Attachment of Alcohol-, Thiol-, and Amine-Containing Molecules. Langmuir. 25:5120-5126.
Sturm R., Sheynkman G., Booth C., Smith L.M, Pedersen J.A, Li L.J.  2012.  Absolute Quantification of Prion Protein (90-231) Using Stable Isotope-Labeled Chymotryptic Peptide Standards in a LC-MRM AQUA Workflow. Journal of the American Society for Mass Spectrometry. 23:1522-1533.
Ono T., Scalf M., Smith L.M.  1997.  2'-fluoro modified nucleic acids: polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry. Nucleic Acids Research. 25:4581-4588.
Conference Paper
Liu Q., Guo Z., Fei Z., Condon A.E, Corn R.M, Lagally M.G, Smith L.M.  1999.  A surface-based approach to DNA computation. :123-132.
Book Chapter
Sheynkman G.M, Shortreed M.R, Cesnik A.J, Smith L.M.  2016.  Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. 9:521-545.
Griffin TJ, Tang W, Smith L.M.  1999.  MALDI-TOF mass spectrometric detection of PNA hybrids for genetic analysis. :143-154.
Krusemark CJ, Frey BL, Smith L.M, Belshaw PJ.  2011.  Complete Chemical Modification of Amine and Acid Functional Groups of Peptides and Small Proteins. 753:77-91.

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