Publications

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D
Drossman H., Luckey J.A, Kostichka A.J, Dcunha J., Smith L.M.  1990.  High-speed separations of DNA sequencing reactions by capillary electrophoresis. Analytical Chemistry. 62:900-903.
Donnelly D.P, Rawlins C.M, DeHart C.J, Fornelli L, Schachner L.F, Lin Z, Lippens J.L, Aluri K.C, Sarin R, Chen B et al..  2019.  Best practices and benchmarks for intact protein analysis for top-down mass spectrometry. Nature methods. 16(7)
Denton D.D, Thiel A.J, Smith L.M, Bajikar S., White V., Ghodssi R., Fish G., McCaughan L..  1994.  Fabrication of microstructures for use in biological and optical applications. Proceedings - Electrochemical Society. 94-14:103-14.
Dai Y.X, Shortreed M.R, Scalf M., Frey B.L, Cesnik A.J, Solntsev S., Schaffer L.V, Smith L.M.  2017.  Elucidating Escherichia coil Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database. Journal of Proteome Research. 16:4156-4165.
Dai Y, Kennedy-Darling J, Shortreed MR, Scalf M, Gasch AP, Smith L.M.  2017.  Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins. Analytical Chemistry. 89:7841-7846.
Dai Y., Buxton K.E, Schaffer L.V, Miller R.M, Millikin R.J, Scalf M., Frey B.L, Shortreed M.R, Smith L.M.  2019.  Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database. Journal of Proteome Research. 18(10)
Dai Y.L, Millikin R.J, Rolfs Z., Shortreed M.R, Smith L.M.  2022.  A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis. Journal of Proteome Research. 21:2609-2618.
D'Cunha J., Berson B.J, Brumley, Jr. R.L, Wagner P.R, Smith L.M.  1990.  An automated instrument for the performance of enzymatic DNA sequencing reactions. BioTechniques. 9:80-5,88-90.
C
Connell C., Fung S., Heiner C., Bridgham J., Chakerian V., Heron E., Jones B., Menchen S., Mordan W., Raff M. et al..  1987.  Automated DNA-Sequence Analysis. BioTechniques. 5:342-&.
Collins F.S, Benjamin L.J, Botstein D., Cox J.R, Davidson N., Gray J.W, Holtzman N., Housman D.E, Jamison K.R, Nelkin D. et al..  1994.  Statement on use of DNA testing for presymptomatic identification of cancer risk. JAMA. 271:785-785.
Chen D.H, Peterson M.D, Brumley R.L, Giddings M.C, Buxton E.C, Westphall M., Smith L.M.  1995.  Side Excitation of Fluorescence in Ultrathin Slab Gel Electrophoresis. Analytical Chemistry. 67:3405-3411.
Chen D.H, Johnson A.F, Severin J.M, Rank D.R, Smith L.M, Guilfoyle R.A.  1996.  M13-102: A vector for facilitating construction and improving quality of M13 shotgun libraries. Gene. 172:53-57.
Chen X., Fei Z.D, Smith L.M, Bradbury E.M, Majidi V..  1999.  Stable-isotope-assisted MALDI-TOF mass spectrometry for accurate determination of nucleotide compositions of PCR products. Analytical Chemistry. 71:3118-3125.
Chen X., Smith L.M, Bradbury E.M.  2000.  Site-specific mass tagging with stable isotopes in proteins for accurate and efficient protein identification. Analytical Chemistry. 72:1134-1143.
Chen X.Y, Westphall M.S, Smith L.M.  2003.  Mass spectrometric analysis of DNA mixtures: Instrumental effects responsible for decreased sensitivity with increasing mass. Analytical Chemistry. 75:5944-5952.
Chen Y., Shortreed M.R, Peelen D., Lu M.C, Smith L.M.  2004.  Surface amplification of invasive cleavage products. Journal of the American Chemical Society. 126:3016-3017.
Chen Y., Shortreed M.R, Olivier M., Smith L.M.  2005.  Parallel single nucleotide polymorphism genotyping by surface invasive cleavage with universal detection. Analytical Chemistry. 77:2400-2405.
Chen S.Y, Zheng T., Shortreed M.R, Alexander C., Smith L.M.  2007.  Analysis of cell surface carbohydrate expression patterns in normal and tumorigenic human breast cell lines using lectin arrays. Analytical Chemistry. 79:5698-5702.
Chen S., Phillips M.F, Cerrina F., Smith L.M.  2009.  Controlling Oligonucleotide Surface Density in Light-Directed DNA Array Fabrication. Langmuir. 25:6570-6575.
Chen S.Y, Smith L.M.  2009.  Photopatterned Thiol Surfaces for Biomolecule Immobilization. Langmuir. 25:12275-12282.
Chen X., Lu L., Mayer K.S, Scalf M., Qian S., Lomax A., Smith L.M, Zhong X..  2016.  POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Elife. 5
Chen X.S, Lu L., Qian S.M, Scalf M., Smith L.M, Zhong X.H.  2018.  Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing. Plant Cell. 30:134-152.
Cesnik A.J, Shortreed M.R, Sheynkman G.M, Frey B.L, Smith L.M.  2016.  Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy. Journal of Proteome Research. 15:800-808.
Cesnik A.J, Yang B., Truong A., Etheridge T., Spiniello M., Steinbrink M.I, Shortreed M.R, Frey B.L, Jarrard D.F, Smith L.M.  2018.  Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers. Transl Oncol. 11:808-814.
Cesnik A.J, Shortreed M.R, Schaffer L.V, Knoener R.A, Frey B.L, Scalf M., Solntsev S.K, Dai Y.X, Gasch A.P, Smith L.M.  2018.  Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. 17:568-578.

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