%0 Journal Article %J Journal of Proteome Research %D 2022 %T MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses %A Carr, A. V. %A Frey, B. L. %A Scalf, M. %A Cesnik, A. J. %A Rolfs, Z. %A Pike, K. A. %A Yang, B. %A Keller, M. P. %A Jarrard, D. F. %A Shortreed, M. R. %A Smith, L. M. %B Journal of Proteome Research %V 21 %P 410-419 %8 Feb %@ 1535-3893 %G eng %M WOS:000752365700010 %R 10.1021/acs.jproteome.1c00756 %0 Journal Article %J eLife %D 2022 %T Multi-step recognition of potential 5' splice sites by the Saccharomyces cerevisiae U1 snRNP %A Hansen, S. R. %A White, D. S. %A Scalf, M. %A Correa, I. R. %A Smith, L. M. %A Hoskins, A. A. %A Staley, J. P. %B eLife %V 11 %8 Aug %@ 2050-084X %G eng %M WOS:000849185900001 %] e70534 %R 10.7554/eLife.70534 %0 Journal Article %D 2021 %T Mesh Fragmentation Improves Dissociation Efficiency in Top-down Proteomics %A Lu, L. %A Scalf, M. %A Shortreed, M. R. %A Smith, L. M. %V 32 %P 1319-1325 %8 Jun %@ 1044-0305 %G eng %M WOS:000714641000006 %R 10.1021/jasms.0c00462 %0 Journal Article %J Molecular Plant %D 2017 %T Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome during Photomorphogenesis %A Aguilar-Hernandez, V. %A Kim, D. Y. %A Stankey, R. J. %A Scalf, M. %A Smith, L. M. %A Vierstra, R. D. %B Molecular Plant %V 10 %P 846-865 %8 Jun %@ 1674-2052 %G eng %R 10.1016/j.molp.2017.04.008 %0 Journal Article %J Proteomics %D 2016 %T Morpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine %A Gemperline, D. C. %A Scalf, M. %A Smith, L. M. %A Vierstra, R. D. %B Proteomics %V 16 %P 920-924 %G eng %9 Article %R 10.1002/pmic.201500420 %0 Journal Article %J Biochemical and Biophysical Research Communications %D 2014 %T Methylation of yeast ribosomal protein S2 is elevated during stationary phase growth conditions %A Ladror, D. T. %A Frey, B. L. %A Scalf, M. %A Levenstein, M. E. %A Artymiuk, J. M. %A L. M. Smith %B Biochemical and Biophysical Research Communications %V 445 %P 535-541 %8 Mar %@ 0006-291X %G English %9 Article %R 10.1016/j.bbrc.2014.01.040 %0 Journal Article %J Angewandte Chemie-International Edition %D 2006 %T Mixed isotope photoaffinity reagents for identification of small-molecule targets by mass spectrometry %A Lamos, S. M. %A Krusemark, C. J. %A McGee, C. J. %A Scalf, M. %A L. M. Smith %A Belshaw, P. J. %B Angewandte Chemie-International Edition %V 45 %P 4329-4333 %@ 1433-7851 %G eng %R 10.1002/anie.200600743