%0 Journal Article %J Plant Physiology %D 2019 %T HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development %A K.S Mayer %A X. Chen %A D. Sanders %A J. Chen %A J. Jiang %A P. N %A M. Scalf %A L.M Smith %A X. Zhong %B Plant Physiology %V 180 %P 342-355 %G eng %N 1 %0 Journal Article %J Journal of Biological Chemistry %D 2019 %T Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis %A Gemperline, D. C. %A Marshall, R. S. %A Lee, K. H. %A Zhao, Q. Z. %A Hu, W. M. %A McLoughlin, F. %A Scalf, M. %A Smith, L. M. %A Vierstra, R. D. %B Journal of Biological Chemistry %V 294 %P 17570-17592 %8 Nov %@ 0021-9258 %G eng %M WOS:000503173500032 %R 10.1074/jbc.RA119.010219 %0 Journal Article %J Plant Cell %D 2018 %T Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing %A Chen, X. S. %A Lu, L. %A Qian, S. M. %A Scalf, M. %A Smith, L. M. %A Zhong, X. H. %B Plant Cell %V 30 %P 134-152 %8 Jan %@ 1040-4651 %G eng %R 10.1105/tpc.17.00626 %0 Journal Article %J Stem Cell Reports %D 2018 %T Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance %A Zaidan, N. Z. %A Walker, K. J. %A Brown, J. E. %A Schaffer, L. V. %A Scalf, M. %A Shortreed, M. R. %A Iyer, G. %A Smith, L. M. %A Sridharan, R. %B Stem Cell Reports %V 10 %P 627-641 %8 Feb %@ 2213-6711 %G eng %R 10.1016/j.stemcr.2017.12.016 %0 Journal Article %J Nature genetics %D 2018 %T EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis %A Z. Yang %A S. Qian %A R.N Scheid %A L. Lu %A X. Chen %A R. Liu %A X. Du %A X. Lv %A M.D Boersma %A M. Scalf %A L.M Smith %A J.M Denu %A J.Du %A X. Zhong %B Nature genetics %V 50 %G eng %N 9 %0 Journal Article %J Nature Chemical Biology %D 2018 %T How many human proteoforms are there? %A Aebersold, R. %A Agar, J. N. %A Amster, I. J. %A Baker, M. S. %A Bertozzi, C. R. %A Boja, E. S. %A Costello, C. E. %A Cravatt, B. F. %A Fenselau, C. %A Garcia, B. A. %A Ge, Y. %A Gunawardena, J. %A Hendrickson, R. C. %A Hergenrother, P. J. %A Huber, C. G. %A Ivanov, A. R. %A Jensen, O. N. %A Jewett, M. C. %A Kelleher, N. L. %A Kiessling, L. L. %A Krogan, N. J. %A Larsen, M. R. %A Loo, J. A. %A Loo, R. R. O. %A Lundberg, E. %A MacCoss, M. J. %A Mallick, P. %A Mootha, V. K. %A Mrksich, M. %A Muir, T. W. %A Patrie, S. M. %A Pesavento, J. J. %A Pitteri, S. J. %A Rodriguez, H. %A Saghatelian, A. %A Sandoval, W. %A Schluter, H. %A Sechi, S. %A Slavoff, S. A. %A Smith, L. M. %A Snyder, M. P. %A Thomas, P. M. %A Uhlen, M. %A Van Eyk, J. E. %A Vidal, M. %A Walt, D. R. %A White, F. M. %A Williams, E. R. %A Wohlschlager, T. %A Wysocki, V. H. %A Yates, N. A. %A Young, N. L. %A Zhang, B. %B Nature Chemical Biology %V 14 %P 206-214 %8 Mar %@ 1552-4450 %G eng %R 10.1038/nchembio.2576 %0 Journal Article %J Human Molecular Genetics %D 2018 %T Mutation-dependent aggregation and toxicity in a Drosophila model for UBQLN2-associated ALS %A Kim, S. H. %A Stiles, S. G. %A Feichtmeier, J. M. %A Ramesh, N. %A Zhan, L. H. %A Scalf, M. A. %A Smith, L. M. %A Pandey, U. B. %A Tibbetts, R. S. %B Human Molecular Genetics %V 27 %P 322-337 %8 Jan %@ 0964-6906 %G eng %R 10.1093/hmg/ddx403 %0 Journal Article %J Journal of Proteome Research %D 2017 %T Elucidating Protein-DNA Interactions in Human Alphoid Chromatin via Hybridization Capture and Mass Spectrometry %A Buxton, K. E. %A Kennedy-Darling, J. %A Shortreed, M. R. %A Zaidan, N. Z. %A Olivier, M. %A Scalf, M. %A Sridharan, R. %A Smith, L. M. %B Journal of Proteome Research %V 16 %P 3433-3442 %8 Sep %@ 1535-3893 %G eng %R 10.1021/acs.jproteome.7b00448 %0 Journal Article %J Elife %D 2016 %T POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis %A Chen, X. %A Lu, L. %A Mayer, K. S. %A Scalf, M. %A Qian, S. %A Lomax, A. %A Smith, L. M. %A Zhong, X. %B Elife %V 5 %G eng %0 Journal Article %J Plos One %D 2011 %T Sequence-Specific Capture of Protein-DNA Complexes for Mass Spectrometric Protein Identification %A Wu, C. H. %A Chen, S. Y. %A Shortreed, M. R. %A Kreitinger, G. M. %A Yuan, Y. %A Frey, B. L. %A Zhang, Y. %A Mirza, S. %A Cirillo, L. A. %A Olivier, M. %A L. M. Smith %B Plos One %V 6 %8 Oct %@ 1932-6203 %G eng %2 PMC3197616 %] e26217 %R 10.1371/journal.pone.0026217 %0 Journal Article %J Molecular Cell %D 2011 %T Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction %A Hallows, William C. %A Yu, Wei %A Smith, Brian C. %A Devires, Mark K. %A Ellinger, James J. %A Someya, Shinichi %A Shortreed, Michael R. %A Prolla, Tomas %A Markley, John L. %A L. M. Smith %A Zhao, Shimin %A Guan, Kun-Liang %A Denu, John M. %B Molecular Cell %V 41 %P 139-149 %8 Jan %G eng %2 PMC3101115 %R 10.1016/j.molcel.2011.01.002 %F ISI 2011 03 18 %0 Journal Article %J Analytical Chemistry %D 2008 %T Membrane protein separation and analysis by supercritical fluid chromatography-mass spectrometry %A Zhang, Xu %A Scalf, Mark %A Westphall, Michael S. %A L. M. Smith %B Analytical Chemistry %V 80 %P 2590-2598 %8 Apr %G eng %R 10.1021/ac702319u %F ISI 2008 04 18 %0 Journal Article %J Analytical Chemistry %D 2007 %T Analysis of cell surface carbohydrate expression patterns in normal and tumorigenic human breast cell lines using lectin arrays %A Chen, S. Y. %A Zheng, T. %A Shortreed, M. R. %A Alexander, C. %A L. M. Smith %B Analytical Chemistry %V 79 %P 5698-5702 %8 Aug %@ 0003-2700 %G eng %2 PMC2529168 %R 10.1021/ac070423k %0 Journal Article %J Biomedical Microdevices %D 2007 %T Lectin-modified microchannels for mammalian cell capture and purification %A Zheng, Ting %A Yu, Hongmei %A Alexander, Caroline M. %A Beebe, David J. %A L. M. Smith %B Biomedical Microdevices %V 9 %P 611-617 %8 Aug %G eng %R 10.1007/s10544-007-9074-2 %F ISI 2007 09 14 %0 Journal Article %J Journal of the American Society for Mass Spectrometry %D 2006 %T Identification of mammalian cell lines using MALDI-TOF and LC-ESI-MS/MS mass spectrometry %A Zhang, X. %A Scalf, M. %A Berggren, T. W. %A Westphall, M. S. %A L. M. Smith %B Journal of the American Society for Mass Spectrometry %V 17 %P 490-499 %8 Apr %G eng %R 10.1016/j.jasms.2005.12.007 %F ISI 2006 week 19 %0 Journal Article %J Journal of Proteome Research %D 2006 %T Specific capture of mammalian cells by cell surface receptor binding to ligand immobilized on gold thin films %A Peelen, D. %A Kodoyianni, V. %A Lee, J. %A Zheng, T. %A Shortreed, M. R. %A L. M. Smith %B Journal of Proteome Research %V 5 %P 1580-1585 %8 Jul %G eng %2 PMC2586825 %R 10.1021/pr050467e %0 Journal Article %J Journal of the American Chemical Society %D 2005 %T Lectin arrays for profiling cell surface carbohydrate expression %A Zheng, T. %A Peelen, D. %A L. M. Smith %B Journal of the American Chemical Society %V 127 %P 9982-9983 %8 Jul 20 %G eng %R 10.1021/ja0505550 %F ISI 2005 week 34 %0 Journal Article %J Journal of the American Chemical Society %D 2000 %T Synthesis and characterization of DNA-modified silicon (111) surfaces %A Strother, T. %A Cai, W. %A Zhao, X. S. %A Hamers, R. J. %A L. M. Smith %B Journal of the American Chemical Society %V 122 %P 1205-1209 %8 Feb %@ 0002-7863 %G eng %R 10.1021/ja9936161 %0 Journal Article %J Analytical Chemistry %D 1997 %T Controlling DNA Fragmentation in MALDI-MS by Chemical Modification %A Tang, Wei %A Zhu, Lin %A L. M. Smith %B Analytical Chemistry %V 69 %P 302-312 %@ 0003-2700 %G English %R 10.1021/ac960865o %0 Journal Article %J Analytical Chemistry %D 1997 %T DNA analysis using an electrospray scanning mobility particle sizer %A Mouradian, S. %A Skogen, J. W. %A Dorman, F. D. %A Zarrin, F. %A Kaufman, S. L. %A L. M. Smith %B Analytical Chemistry %V 69 %P 919-925 %8 Mar %@ 0003-2700 %G eng %R 10.1021/ac960785k %0 Journal Article %J International Journal of Mass Spectrometry and Ion Processes %D 1997 %T Factors influencing oligonucleotide stability in matrix-assisted laser desorption/ionization (MALDI) mass spectroscopy %A Tang, Wei %A Krause, Joern %A Zhu, Lin %A L. M. Smith %B International Journal of Mass Spectrometry and Ion Processes %V 169/170 %P 301-311 %@ 0168-1176 %G English %R 10.1016/s0168-1176(97)00204-8 %0 Journal Article %J Journal of the American Society for Mass Spectrometry %D 1997 %T Positive ion formation in the ultraviolet matrix- assisted laser desorption/ionization analysis of oligonucleotides by using 2,5-dihydroxybenzoic acid %A Tang, Wei %A Nelson, Christine M. %A Zhu, Lin %A L. M. Smith %B Journal of the American Society for Mass Spectrometry %V 8 %P 218-224 %@ 1044-0305 %G English %R 10.1016/s1044-0305(96)00237-1 %0 Journal Article %J Proceedings of SPIE - The International Society for Optical Engineering %D 1996 %T Fragmentation mechanisms of oligonucleotides in MALDI mass spectrometry %A Nelson, Christine M. %A Zhu, Lin %A Tang, Wei %A L. M. Smith %A Crellin, Kevin %A Berry, Jamal %A Beauchamp, Jesse L. %B Proceedings of SPIE - The International Society for Optical Engineering %V 2680 %P 247-255 %@ 0277-786X %G English %R 10.1117/12.237612 %0 Journal Article %J Journal of the American Chemical Society %D 1995 %T Oligodeoxynucleotide Fragmentation in MALDI/TOF Mass Spectrometry Using 355-nm Radiation %A Zhu, L. %A Parr, G. R. %A Fitzgerald, M. C. %A Nelson, C. M. %A L. M. Smith %B Journal of the American Chemical Society %V 117 %P 6048-6056 %8 Jun %@ 0002-7863 %G eng %R 10.1021/ja00127a018 %0 Journal Article %J Rapid Communications in Mass Spectrometry %D 1993 %T The analysis of mock DNA sequencing reactions using matrix-assisted laser desorption/ionization mass spectrometry %A Fitzgerald, M. C. %A Zhu, L. %A L. M. Smith %B Rapid Communications in Mass Spectrometry %V 7 %P 895-897 %8 Oct %@ 0951-4198 %G eng %R 10.1002/rcm.1290071008