%0 Journal Article %J Journal of Biological Chemistry %D 2019 %T Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis %A Gemperline, D. C. %A Marshall, R. S. %A Lee, K. H. %A Zhao, Q. Z. %A Hu, W. M. %A McLoughlin, F. %A Scalf, M. %A Smith, L. M. %A Vierstra, R. D. %B Journal of Biological Chemistry %V 294 %P 17570-17592 %8 Nov %@ 0021-9258 %G eng %M WOS:000503173500032 %R 10.1074/jbc.RA119.010219 %0 Journal Article %J Plant Cell %D 2018 %T SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress %A Rytz, T. C. %A Miller, M. J. %A McLoughlin, F. %A Augustine, R. C. %A Marshall, R. S. %A Juan, Y. T. %A Charng, Y. Y. %A Scalf, M. %A Smith, L. M. %A Vierstra, R. D. %B Plant Cell %V 30 %P 1077-1099 %8 May %@ 1040-4651 %G eng %R 10.1105/tpc.17.00993 %0 Journal Article %J Molecular Plant %D 2017 %T Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome during Photomorphogenesis %A Aguilar-Hernandez, V. %A Kim, D. Y. %A Stankey, R. J. %A Scalf, M. %A Smith, L. M. %A Vierstra, R. D. %B Molecular Plant %V 10 %P 846-865 %8 Jun %@ 1674-2052 %G eng %R 10.1016/j.molp.2017.04.008 %0 Journal Article %J Proteomics %D 2016 %T Morpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine %A Gemperline, D. C. %A Scalf, M. %A Smith, L. M. %A Vierstra, R. D. %B Proteomics %V 16 %P 920-924 %G eng %9 Article %R 10.1002/pmic.201500420 %0 Journal Article %J Plant Cell %D 2013 %T Advanced Proteomic Analyses Yield a Deep Catalog of Ubiquitylation Targets in Arabidopsis %A Kim, D. Y. %A Scalf, M. %A L. M. Smith %A Vierstra, R. D. %B Plant Cell %V 25 %P 1523-1540 %8 May %@ 1040-4651 %G English %9 Article %2 PMC3694690 %R 10.1105/tpc.112.108613 %0 Journal Article %J Plos One %D 2013 %T Characterization and Quantification of Intact 26S Proteasome Proteins by Real-Time Measurement of Intrinsic Fluorescence Prior to Top-down Mass Spectrometry %A Russell, J. D. %A Scalf, M. %A Book, A. J. %A Ladror, D. T. %A Vierstra, R. D. %A L. M. Smith %A Coon, J. J. %B Plos One %V 8 %8 Mar %@ 1932-6203 %G eng %2 PMC3594244 %] e58157 %R 10.1371/journal.pone.0058157 %0 Journal Article %J Molecular & Cellular Proteomics %D 2013 %T Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation in Arabidopsis %A Miller, M. J. %A Scalf, M. %A Rytz, T. C. %A Hubler, S. L. %A L. M. Smith %A Vierstra, R. D. %B Molecular & Cellular Proteomics %V 12 %P 449-463 %8 Feb %@ 1535-9476 %G eng %2 PMC3567865 %R 10.1074/mcp.M112.025056 %0 Journal Article %J Plant Journal %D 2009 %T Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis %A Saracco, S. A. %A Hansson, M. %A Scalf, M. %A Walker, J. M. %A L. M. Smith %A Vierstra, R. D. %B Plant Journal %V 59 %P 344-358 %8 Jul %G eng %2 PMC3639010 %R 10.1111/j.1365-313X.2009.03862.x %F ISI 2009 07 17 %0 Journal Article %J Plant Physiology %D 2005 %T Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis %A Book, A. J. %A Yang, P. Z. %A Scalf, M. %A L. M. Smith %A Vierstra, R. D. %B Plant Physiology %V 138 %P 1046-1057 %8 Jun %G eng %2 PMC1150419 %R 10.1104/pp.104.057406 %F ISI 2005 week 28