%0 Journal Article %J Journal of Visualized Experiments %D 2018 %T Adaptation of Hybridization Capture of Chromatin-associated Proteins for Proteomics to Mammalian Cells %A Hector Guillen-Ahlers %A P.K Rao %A D.S Perumalla %A M.J Montoya %A A.YL Jadhav %A M.R Shortreed %A L.M Smith %A Michael Olivier %B Journal of Visualized Experiments %G eng %N 136 %0 Journal Article %J Journal of Proteome Research %D 2017 %T Elucidating Protein-DNA Interactions in Human Alphoid Chromatin via Hybridization Capture and Mass Spectrometry %A Buxton, K. E. %A Kennedy-Darling, J. %A Shortreed, M. R. %A Zaidan, N. Z. %A Olivier, M. %A Scalf, M. %A Sridharan, R. %A Smith, L. M. %B Journal of Proteome Research %V 16 %P 3433-3442 %8 Sep %@ 1535-3893 %G eng %R 10.1021/acs.jproteome.7b00448 %0 Journal Article %J Bmc Genomics %D 2017 %T Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys %A Proffitt, J. M. %A Glenn, J. %A Cesnik, A. J. %A Jadhav, A. %A Shortreed, M. R. %A Smith, L. M. %A Kavanagh, K. %A Cox, L. A. %A Olivier, M. %B Bmc Genomics %V 18 %8 Nov %@ 1471-2164 %G eng %] 877 %R 10.1186/s12864-017-4279-0 %0 Journal Article %J Genomics %D 2016 %T HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae %A Guillen-Ahlers, H. %A Rao, P. K. %A Levenstein, M. E. %A Kennedy-Darling, J. %A Perumalla, D. S. %A Jadhav, A. Y. %A Glenn, J. P. %A Ludwig-Kubinski, A. %A Drigalenko, E. %A Montoya, M. J. %A Goring, H. H. %A Anderson, C. D. %A Scalf, M. %A Gildersleeve, H. I. %A Cole, R. %A Greene, A. M. %A Oduro, A. K. %A Lazarova, K. %A Cesnik, A. J. %A Barfknecht, J. %A Cirillo, L. A. %A Gasch, A. P. %A Shortreed, M. R. %A Smith, L. M. %A Olivier, M. %B Genomics %V 107 %P 267-273 %G eng %0 Journal Article %J Biomaterials %D 2016 %T Protein turnover during in vitro tissue engineering %A Li, Q. Y. %A Chang, Z. %A Oliveira, G. %A Xiong, M. %A L. M. Smith %A Frey, B. L. %A Welham, N. V. %B Biomaterials %V 81 %P 104-113 %8 Mar %@ 0142-9612 %G eng %R 10.1016/j.biomaterials.2015.12.004 %0 Journal Article %J Biomaterials %D 2016 %T Proteomic analysis of naturally-sourced biological scaffolds %A Li, Q. Y. %A Uygun, B. E. %A Geerts, S. %A Ozer, S. %A Scalf, M. %A Gilpin, S. E. %A Ott, H. C. %A Yarmush, M. L. %A L. M. Smith %A Welham, N. V. %A Frey, B. L. %B Biomaterials %V 75 %P 37-46 %8 Jan %@ 0142-9612 %G eng %] Ber s, 1995, journal of cell biology, v131, p1083 %R 10.1016/j.biomaterials.2015.10.011 %0 Journal Article %J Physiological Genomics %D 2014 %T Advanced methods for the analysis of chromatin-associated proteins %A Guillen-Ahlers, H. %A Shortreed, M. R. %A L. M. Smith %A Olivier, M. %B Physiological Genomics %V 46 %P 441-447 %8 Jul %@ 1094-8341 %G eng %2 PMC4080278 %R 10.1152/physiolgenomics.00041.2014 %0 Journal Article %J Journal of Proteome Research %D 2014 %T Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae %A Kennedy-Darling, J. %A Guillen-Ahlers, H. %A Shortreed, M. R. %A Scalf, M. %A Frey, B. L. %A Kendziorski, C. %A Olivier, M. %A Gasch, A. P. %A L. M. Smith %B Journal of Proteome Research %V 13 %P 3810-3825 %8 Aug %@ 1535-3893 %G eng %2 PMC4123949 %R 10.1021/pr5004938 %0 Journal Article %J Journal of Proteome Research %D 2014 %T Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework %A Jagtap, P. D. %A Johnson, J. E. %A Onsongo, G. %A Sadler, F. W. %A Murray, K. %A Wang, Y. B. %A Shenykrnan, G. M. %A Bandhakavi, S. %A L. M. Smith %A Griffin, T. J. %B Journal of Proteome Research %V 13 %P 5898-5908 %8 Dec %@ 1535-3893 %G English %9 Article %R 10.1021/pr500812t %0 Journal Article %J Environmental Science & Technology %D 2011 %T Hydroxycarboxylic Acid-Derived Organosulfates: Synthesis, Stability, and Quantification in Ambient Aerosol %A Olson, Corey N. %A Galloway, Melissa M. %A Yu, Ge %A Hedman, Curtis J. %A Lockett, Matthew R. %A Yoon, T. P. %A Stone, Elizabeth A. %A L. M. Smith %A Keutsch, F. N. %B Environmental Science & Technology %V 45 %P 6468-6474 %8 Aug %G eng %R 10.1021/es201039p %F ISI 2011 08 10 %0 Journal Article %J Plos One %D 2011 %T Sequence-Specific Capture of Protein-DNA Complexes for Mass Spectrometric Protein Identification %A Wu, C. H. %A Chen, S. Y. %A Shortreed, M. R. %A Kreitinger, G. M. %A Yuan, Y. %A Frey, B. L. %A Zhang, Y. %A Mirza, S. %A Cirillo, L. A. %A Olivier, M. %A L. M. Smith %B Plos One %V 6 %8 Oct %@ 1932-6203 %G eng %2 PMC3197616 %] e26217 %R 10.1371/journal.pone.0026217 %0 Journal Article %J Analyst %D 2011 %T To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation %A L. M. Smith %A Shortreed, Michael R. %A Olivier, Michael %B Analyst %V 136 %P 3060-3065 %G eng %2 PMC3672230 %R 10.1039/c1an15037e %F ISI 2011 08 03 %0 Journal Article %J Analytical Chemistry %D 2008 %T Identification of Cell Surface Markers to Differentiate Rat Endothelial and Fibroblast Cells Using Lectin Arrays and LC-ESI-MS/MS %A Lee, J. E. %A Mirza, S. P. %A Didier, D. N. %A Scalf, M. %A Olivier, M. %A Greene, A. S. %A L. M. Smith %B Analytical Chemistry %V 80 %P 8269-8275 %8 Nov %G eng %2 PMC2950091 %R 10.1021/ac801390b %F ISI 2008 11 27 %0 Journal Article %J Analytical Biochemistry %D 2007 %T Characterization of vascular endothelial growth factor receptors on the endothelial cell surface during hypoxia using whole cell binding arrays %A Lee, Ji Eun %A Didier, Damela N. %A Lockett, Matthew R. %A Scalf, Mark %A Greene, Andrew S. %A Olivier, Michael %A L. M. Smith %B Analytical Biochemistry %V 369 %P 241-247 %8 Oct %G eng %2 PMC2706495 %R 10.1016/j.ab.2007.06.010 %F ISI 2007 10 19 %0 Journal Article %J Analytical Chemistry %D 2005 %T Parallel single nucleotide polymorphism genotyping by surface invasive cleavage with universal detection %A Chen, Y. %A Shortreed, M. R. %A Olivier, M. %A L. M. Smith %B Analytical Chemistry %V 77 %P 2400-2405 %8 Apr 15 %G eng %R 10.1021/ac0483825 %F ISI 2005 week 20 %0 Journal Article %J Analytical Chemistry %D 2002 %T Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection %A Berggren, W. T. %A Takova, T. %A Olson, M. C. %A Eis, P. S. %A Kwiatkowski, R. W. %A L. M. Smith %B Analytical Chemistry %V 74 %P 1745-1750 %8 Apr 15 %G eng %R 10.1021/ac011167t %0 Journal Article %J Nucleic Acids Research %D 1998 %T MALDI-TOF mass spectrometric typing of single nucleotide polymorphisms with mass-tagged ddNTPs %A Fei, Z. D. %A Ono, T. %A L. M. Smith %B Nucleic Acids Research %V 26 %P 2827-2828 %8 Jun %@ 0305-1048 %G eng %2 PMC147612 %R 10.1093/nar/26.11.2827 %0 Journal Article %J Nucleic Acids Research %D 1997 %T 2'-fluoro modified nucleic acids: polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry %A Ono, T. %A Scalf, M. %A L. M. Smith %B Nucleic Acids Research %V 25 %P 4581-4588 %8 Nov %@ 0305-1048 %G eng %2 PMC147098 %R 10.1093/nar/25.22.4581 %0 Journal Article %J Biochemica %D 1996 %T The Cleavase Fragment Length Polymorphism (CFLP) assay %A Brow, M. A. D. %A Oldenburg, M. C. %A Lyamichev, V. %A Heisler, L. M. %A Grotelueschen, J. %A Lyamicheva, N. %A Kozyavkin, S. %A Fors, L. %A Dahlberg, J. E. %A L. M. Smith %A Olive, D. M. %B Biochemica %V 1 %P 14-15 %G eng %0 Journal Article %J Journal of Clinical Microbiology %D 1996 %T Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage %A Brow, M. A. D. %A Oldenburg, M. C. %A Lyamichev, V. %A Heisler, L. M. %A Lyamicheva, N. %A Hall, J. G. %A Eagan, N. J. %A Olive, D. M. %A L. M. Smith %A Fors, L. %A Dahlberg, J. E. %B Journal of Clinical Microbiology %V 34 %P 3129-3137 %8 Dec %@ 0095-1137 %G eng %2 PMC229470 %0 Journal Article %J Focus %D 1996 %T Mutation detection by cleavase fragment length polymorphism %A Brow, M. A. D. %A Oldenburg, M. C. %A Lyamichev, V. %A Heisler, L. M. %A Grotelueschen, J. %A Lyamicheva, N. %A Kozyavkin, S. %A Fors, L., %A Dahlberg, J. %A L. M. Smith %A Olive, D. M. %B Focus %V 18 %P 2-5 %G eng %0 Journal Article %J Struct. Methods, Proc. Conversation Discip. Biomol. Stereodyn., 6th %D 1990 %T Peak height variability and accuracy in automated DNA sequencing %A Sanders, Jane Z. %A MacKellar, Sara L. %A Otto, Barbara J. %A Dodd, Christopher T. %A Heiner, Cheryl %A Hood, Leroy E. %A L. M. Smith %B Struct. Methods, Proc. Conversation Discip. Biomol. Stereodyn., 6th %V 1 %P 89-102 %G English