%0 Journal Article %J Journal of Proteome Research %D 2022 %T Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? br %A Plubell, D. L. %A Kall, L. %A Webb-Robertson, B. J. %A Bramer, L. M. %A Ives, A. %A Kelleher, N. L. %A Smith, L. M. %A Montine, T. J. %A Wu, C. C. %A MacCoss, M. J. %B Journal of Proteome Research %V 21 %P 891-898 %8 Apr %@ 1535-3893 %G eng %M WOS:000784194300004 %R 10.1021/acs.jproteome.1c00894 %0 Journal Article %J Journal of Proteome Research %D 2021 %T ProteaseGuru: A Tool for Protease Selection in Bottom-Up Proteomics %A Miller, R. M. %A Ibrahim, K. %A Smith, L. M. %B Journal of Proteome Research %V 20 %P 1936-1942 %8 Apr %@ 1535-3893 %G eng %M WOS:000637005900014 %R 10.1021/acs.jproteome.0c00954 %0 Journal Article %J Iscience %D 2021 %T Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet %A Yau, B. %A Naghiloo, S. %A Diaz-Vegas, A. %A Carr, A. V. %A Van Gerwen, J. %A Needham, E. J. %A Jevon, D. %A Chen, S. Y. %A Hoehn, K. L. %A Brandon, A. E. %A Macia, L. %A Cooney, G. J. %A Shortreed, M. R. %A Smith, L. M. %A Keller, M. P. %A Thorn, P. %A Larance, M. %A James, D. E. %A Humphrey, S. J. %A Kebede, M. A. %B Iscience %V 24 %8 Oct %G eng %M WOS:000713819900003 %] 103099 %R 10.1016/j.isci.2021.103099 %0 Journal Article %J Journal of Biological Chemistry %D 2019 %T Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis %A Gemperline, D. C. %A Marshall, R. S. %A Lee, K. H. %A Zhao, Q. Z. %A Hu, W. M. %A McLoughlin, F. %A Scalf, M. %A Smith, L. M. %A Vierstra, R. D. %B Journal of Biological Chemistry %V 294 %P 17570-17592 %8 Nov %@ 0021-9258 %G eng %M WOS:000503173500032 %R 10.1074/jbc.RA119.010219 %0 Journal Article %J Journal of Proteome Research %D 2018 %T ProForma: A Standard Proteoform Notation %A Leduc, R. D. %A Schwammle, V. %A Shortreed, M. R. %A Cesnik, A. J. %A Solntsev, S. K. %A Shaw, J. B. %A Martin, M. J. %A Vizcaino, J. A. %A Alpi, E. %A Danis, P. %A Kelleher, N. L. %A Smith, L. M. %A Ge, Y. %A Agar, J. N. %A Chamot-Rooke, J. %A Loo, J. A. %A Pasa-Tolic, L. %A Tsybin, Y. O. %B Journal of Proteome Research %V 17 %P 1321-1325 %8 Mar %@ 1535-3893 %G eng %R 10.1021/acs.jproteome.7b00851 %0 Journal Article %J Journal of Proteome Research %D 2018 %T Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families %A Cesnik, A. J. %A Shortreed, M. R. %A Schaffer, L. V. %A Knoener, R. A. %A Frey, B. L. %A Scalf, M. %A Solntsev, S. K. %A Dai, Y. X. %A Gasch, A. P. %A Smith, L. M. %B Journal of Proteome Research %V 17 %P 568-578 %8 Jan %@ 1535-3893 %G eng %R 10.1021/acs.jproteome.7b00685 %0 Journal Article %J Science %D 2018 %T Proteoforms as the next proteomics currency %A Smith, L. M. %A Kelleher, N. L. %B Science %V 359 %P 1106-1107 %8 Mar %@ 0036-8075 %G eng %R 10.1126/science.aat1884 %0 Journal Article %J Chembiochem %D 2017 %T Parallel DNA Synthesis on Poly(ethylene terephthalate) %A Holden, M. T. %A Carter, M. C. D. %A Ting, S. K. %A Lynn, D. M. %A Smith, L. M. %B Chembiochem %V 18 %P 1914-1916 %8 Oct %@ 1439-4227 %G eng %2 PMC5644289 %R 10.1002/cbic.201700321 %0 Journal Article %J Bmc Genomics %D 2017 %T Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys %A Proffitt, J. M. %A Glenn, J. %A Cesnik, A. J. %A Jadhav, A. %A Shortreed, M. R. %A Smith, L. M. %A Kavanagh, K. %A Cox, L. A. %A Olivier, M. %B Bmc Genomics %V 18 %8 Nov %@ 1471-2164 %G eng %] 877 %R 10.1186/s12864-017-4279-0 %0 Journal Article %J Elife %D 2016 %T POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis %A Chen, X. %A Lu, L. %A Mayer, K. S. %A Scalf, M. %A Qian, S. %A Lomax, A. %A Smith, L. M. %A Zhong, X. %B Elife %V 5 %G eng %0 Journal Article %J Biomaterials %D 2016 %T Protein turnover during in vitro tissue engineering %A Li, Q. Y. %A Chang, Z. %A Oliveira, G. %A Xiong, M. %A L. M. Smith %A Frey, B. L. %A Welham, N. V. %B Biomaterials %V 81 %P 104-113 %8 Mar %@ 0142-9612 %G eng %R 10.1016/j.biomaterials.2015.12.004 %0 Book Section %D 2016 %T Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation %A Sheynkman, G. M. %A Shortreed, M. R. %A Cesnik, A. J. %A Smith, L. M. %E Bohn, P. W. %E Pemberton, J. E. %S Annual Review of Analytical Chemistry %I Annual Reviews %C Palo Alto %V 9 %P 521-545 %@ 1936-1327
978-0-8243-4409-2 %G English %M WOS:000379328100023 %R 10.1146/annurev-anchem-071015-041722 %0 Journal Article %J Biomaterials %D 2016 %T Proteomic analysis of naturally-sourced biological scaffolds %A Li, Q. Y. %A Uygun, B. E. %A Geerts, S. %A Ozer, S. %A Scalf, M. %A Gilpin, S. E. %A Ott, H. C. %A Yarmush, M. L. %A L. M. Smith %A Welham, N. V. %A Frey, B. L. %B Biomaterials %V 75 %P 37-46 %8 Jan %@ 0142-9612 %G eng %] Ber s, 1995, journal of cell biology, v131, p1083 %R 10.1016/j.biomaterials.2015.10.011 %0 Journal Article %J Analytical Chemistry %D 2015 %T Photolithographic Synthesis of High-Density DNA and RNA Arrays on Flexible, Transparent, and Easily Subdivided Plastic Substrates %A Holden, M. T. %A Carter, M. C. D. %A Wu, C. H. %A Wolfer, J. %A Codner, E. %A Sussman, M. R. %A Lynn, D. M. %A L. M. Smith %B Analytical Chemistry %V 87 %P 11420-11428 %8 Nov %@ 0003-2700 %G eng %R 10.1021/acs.analchem.5b02893 %0 Journal Article %J Nature Methods %D 2013 %T Proteoform: a single term describing protein complexity %A L. M. Smith %A Kelleher, N. L. %A Ge, Y. %A Consortium Top Down, Proteomics %B Nature Methods %V 10 %P 186-187 %8 Mar %@ 1548-7091 %G eng %R 10.1038/nmeth.2369 %0 Journal Article %J Biomaterials %D 2013 %T Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry %A Welham, N. V. %A Chang, Z. %A L. M. Smith %A Frey, B. L. %B Biomaterials %V 34 %P 669-676 %8 Jan %@ 0142-9612 %G eng %2 PMC3496020 %R 10.1016/j.biomaterials.2012.09.050 %0 Journal Article %J Analytical Chemistry %D 2011 %T Parallel Detection of Intrinsic Fluorescence from Peptides and Proteins for Quantification during Mass Spectrometric Analysis %A Russell, Jason D. %A Hilger, Ryan T. %A Ladror, Daniel T. %A Tervo, Mark A. %A Scalf, Mark %A Shortreed, Michael R. %A Coon, J. J. %A L. M. Smith %B Analytical Chemistry %V 83 %P 2187-2193 %8 Mar %G eng %2 PMC3056920 %R 10.1021/ac103023q %F ISI 2011 03 25 %0 Journal Article %J Langmuir %D 2009 %T Photopatterned Thiol Surfaces for Biomolecule Immobilization %A Chen, S. Y. %A L. M. Smith %B Langmuir %V 25 %P 12275-12282 %8 Oct %G eng %2 PMC2768491 %R 10.1021/la9017135 %F ISI 2009 10 23 %0 Journal Article %J Analytical Chemistry %D 2005 %T Parallel single nucleotide polymorphism genotyping by surface invasive cleavage with universal detection %A Chen, Y. %A Shortreed, M. R. %A Olivier, M. %A L. M. Smith %B Analytical Chemistry %V 77 %P 2400-2405 %8 Apr 15 %G eng %R 10.1021/ac0483825 %F ISI 2005 week 20 %0 Journal Article %J Langmuir %D 2002 %T Photochemical functionalization of diamond films %A Strother, T. %A Knickerbocker, T. %A Russell, J. N. %A Butler, J. E. %A L. M. Smith %A Hamers, R. J. %B Langmuir %V 18 %P 968-971 %8 Feb 19 %G eng %R 10.1021/la0112561 %0 Journal Article %J Materials Research Society Symposium Proceedings %D 2002 %T Preparation and electrochemical characterization of DNA-modified nanocrystalline diamond films %A Yang, Wensha %A Auciello, Orlando %A Butler, James E. %A Cai, Wei %A Carlisle, John A. %A Gerbi, Jennifer E. %A Gruen, Dieter M. %A Knickerbocker, Tanya %A Lasseter, Tami L. %A Russell, John N., Jr. %A L. M. Smith %A Hamers, R. J. %B Materials Research Society Symposium Proceedings %V 737 %@ 0272-9172 %G English %R 10.1557/PROC-737-F4.4 %0 Journal Article %J Biosystems %D 1999 %T Progress toward demonstration of a surface based DNA computation: a one word approach to solve a model satisfiability problem %A Liu, Q. %A Frutos, A. G. %A Wang, L. %A Thiel, A. J. %A Gillmor, S. D. %A Strother, C. T. %A Condon, A. E. %A Corn, R. M. %A Lagally, M. G. %A L. M. Smith %B Biosystems %V 52 %P 25-33 %@ 0303-2647 %G English %R 10.1016/s0303-2647(99)00029-5 %0 Journal Article %J Journal of the American Society for Mass Spectrometry %D 1997 %T Positive ion formation in the ultraviolet matrix- assisted laser desorption/ionization analysis of oligonucleotides by using 2,5-dihydroxybenzoic acid %A Tang, Wei %A Nelson, Christine M. %A Zhu, Lin %A L. M. Smith %B Journal of the American Society for Mass Spectrometry %V 8 %P 218-224 %@ 1044-0305 %G English %R 10.1016/s1044-0305(96)00237-1 %0 Journal Article %J Analytical Biochemistry %D 1996 %T Purification of single-stranded M13 DNA by cooperative triple-helix-mediated affinity capture %A Johnson, A. F. %A Wang, R. F. %A Ji, H. M. %A Chen, D. H. %A Guilfoyle, R. A. %A L. M. Smith %B Analytical Biochemistry %V 234 %P 83-95 %8 Feb %@ 0003-2697 %G eng %R 10.1006/abio.1996.0053 %0 Journal Article %J Struct. Methods, Proc. Conversation Discip. Biomol. Stereodyn., 6th %D 1990 %T Peak height variability and accuracy in automated DNA sequencing %A Sanders, Jane Z. %A MacKellar, Sara L. %A Otto, Barbara J. %A Dodd, Christopher T. %A Heiner, Cheryl %A Hood, Leroy E. %A L. M. Smith %B Struct. Methods, Proc. Conversation Discip. Biomol. Stereodyn., 6th %V 1 %P 89-102 %G English %0 Journal Article %J Biophysical Journal %D 1981 %T Pattern photobleaching of fluorescent lipid vesicles using polarized laser light %A L. M. Smith %A McConnell, H. M. %A Smith, B. A. %A Parce, J. W. %B Biophysical Journal %V 33 %P 139-146 %@ 0006-3495 %G eng %R 10.1016/S0006-3495(81)84877-1